View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_high_11 (Length: 299)
Name: NF3812_high_11
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 45725200 - 45725461
Alignment:
| Q |
23 |
tctccatcgcctcagaaaaacaaagtataatctccatgaaaccacctattttcttcgcagccgcctttgtcggaatcctcaccggtcttgatgattatct |
122 |
Q |
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| T |
45725200 |
tctccatcgcctcagaaaaacaaaatataatctccatgaaaccacctattttctttgcagccgcctttgtcggaatcctcaccggtcttgacgattatct |
45725299 |
T |
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| Q |
123 |
ctacgcatatggcgttgctcggcttccggtttccacttcttccttaattatagcatctcagcttggtttcaccgcgtttttcgcttttcttcttgtgaaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45725300 |
ctacgcatatggcgttgctcggcttccggtttccacttcttccttaattatagcatctcagcttggtttcaccgcgtttttcgcttttcttcttgtgaaa |
45725399 |
T |
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| Q |
223 |
cagaaatttacagcatttaccgtaaacgccgnnnnnnngcttactgttggtgctgctgtttt |
284 |
Q |
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| T |
45725400 |
cagaaatttacagcatttaccgtaaacgccgtttttttgcttactgttggtgctggtgtttt |
45725461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 45729389 - 45729619
Alignment:
| Q |
23 |
tctccatcgcctcagaaaaacaaagtataatctccatgaaaccacctattttcttcgcagccgcctttgtcggaatcctcaccggtcttgatgattatct |
122 |
Q |
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||||||||||| ||||||||| || |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||| || ||||| |
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| T |
45729389 |
tctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcgcagctgccttcatcggaatcctcaccggccttgacgactatct |
45729488 |
T |
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| Q |
123 |
ctacgcatatggcgttgctcggcttccggtttccacttcttccttaattatagcatctcagcttggtttcaccgcgtttttcgcttttcttcttgtgaaa |
222 |
Q |
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|| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
45729489 |
cttcgcatatggcgttgctcggcttccagtttccacttctgccttaataatagcatctcagcttggtttcactgcgtttttcgcttttcttattgtgaaa |
45729588 |
T |
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| Q |
223 |
cagaaatttacagcatttaccgtaaacgccg |
253 |
Q |
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||||||||||||| ||||| |||||||||| |
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| T |
45729589 |
gagaaatttacagcttttactgtaaacgccg |
45729619 |
T |
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