View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_high_17 (Length: 250)
Name: NF3812_high_17
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_17 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 20475855 - 20475619
Alignment:
| Q |
11 |
cagagagataatagaattgaatatgttgaacttcctaacaaccaaatttttgatgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaa |
110 |
Q |
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| T |
20475855 |
cagagagataatagaattgaatatgttgaacttcctaacac---aatttttgatgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaa |
20475759 |
T |
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| Q |
111 |
attaagctgcaatgcaacaactatttatttttctgaatttattttagattatgtaagtggcatgtttacgattgatggttacttaattgtgttttccttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20475758 |
attaagctgcaatgcaacaactatttatttttctgaatttattttagattatgtaagtggcatgtttacgattgatggttacttaattgtgttttccttg |
20475659 |
T |
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| Q |
211 |
gctagttttacaattttgttggatgattccgttggcagtt |
250 |
Q |
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| T |
20475658 |
gctagttttacaattttgttggatgattccgttggcagtt |
20475619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 13601 - 13805
Alignment:
| Q |
34 |
tgttgaacttcctaacaaccaaatttttgatgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaaattaagctgcaatgcaacaacta |
133 |
Q |
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| T |
13601 |
tgttgaactttctaacaaccaaattcgttatgctgatgaacatatgcagagcttggttttgccttgtcctcgtccacattaatctcgtatgcaacaaatg |
13700 |
T |
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| Q |
134 |
tttatttttctgaatttattttagattatgtaagtggcatgtttacgattgatggttacttaattgtgttttccttggctagttttacaattttgttgga |
233 |
Q |
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| T |
13701 |
tttgtttttctgaatttatgttaggttgtgcatttggcatgatatctattgatggttctttaattatgttttccttagatagtttgactattttgttgga |
13800 |
T |
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| Q |
234 |
tgatt |
238 |
Q |
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||||| |
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| T |
13801 |
tgatt |
13805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 3838120 - 3838324
Alignment:
| Q |
34 |
tgttgaacttcctaacaaccaaatttttgatgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaaattaagctgcaatgcaacaacta |
133 |
Q |
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| T |
3838120 |
tgttgaactttctaacaaccaaattcgttatgctgaggaacatatgcagagcttggttttgccttgtcctcatccacattaatctcgtatgcaacaactg |
3838219 |
T |
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| Q |
134 |
tttatttttctgaatttattttagattatgtaagtggcatgtttacgattgatggttacttaattgtgttttccttggctagttttacaattttgttgga |
233 |
Q |
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||| ||||||||||||||| |||| || || | ||||||| | | |||||||||| |||||| |||||||||| | |||||| || |||||| |||| |
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| T |
3838220 |
tttgtttttctgaatttatgttaggttttgcatttggcatgatatctattgatggttctttaattatgttttccttagatagtttgactattttgctgga |
3838319 |
T |
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| Q |
234 |
tgatt |
238 |
Q |
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||||| |
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| T |
3838320 |
tgatt |
3838324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 33637522 - 33637296
Alignment:
| Q |
13 |
gagagataatagaattgaatatgttgaacttcctaacaaccaaatttttgatgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaaat |
112 |
Q |
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||||||| ||||| |||| || ||||||||| | |||||||||||| ||||| |||| |||||| ||||||||||||| || |||||| |||| || |
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| T |
33637522 |
gagagatgatagagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggtttttccccgtcctcttccacat |
33637423 |
T |
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| Q |
113 |
taagctgcaatgcaacaactatttatttttctgaatttattttagattatgtaagtggcatgtttacgattgatggttacttaattgtgttttccttggc |
212 |
Q |
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| T |
33637422 |
taagcttctatgcaacaattgtttgtattt-tgaatttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaataga |
33637324 |
T |
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| Q |
213 |
tagttttacaattttgttggatgattcc |
240 |
Q |
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| T |
33637323 |
tagtttaactattttgttggatgattcc |
33637296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 33864 - 33786
Alignment:
| Q |
40 |
acttcctaacaaccaaatttttgatgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaaattaagct |
118 |
Q |
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|||||||||||||||||||| | || |||| ||||||| ||||||||||||||||||||| |||| |||||||| |
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| T |
33864 |
acttcctaacaaccaaatttgggcggccgatgaacatatgcgtagcttggttttgcctcgtcctcatccacattaagct |
33786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 13784061 - 13784008
Alignment:
| Q |
184 |
gatggttacttaattgtgttttccttggctagttttacaattttgttggatgat |
237 |
Q |
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||||||| ||||| |||||||||||| |||||||| || ||||||||| ||||| |
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| T |
13784061 |
gatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
13784008 |
T |
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