View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_high_2 (Length: 566)
Name: NF3812_high_2
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 34884583 - 34884115
Alignment:
| Q |
1 |
ttgtgttgactacttatgctacactgggagccgagttgcggtgttcagatactcctgtgaagaaattggggtggaggaggattgttttggatgaggcgca |
100 |
Q |
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| T |
34884583 |
ttgtgttgactacttatgctacattgggagccgagttgcggtgttcagatactcctgtgaagaaattggggtggaggaggattgttttggatgaggcgca |
34884484 |
T |
|
| Q |
101 |
tacgattaagaatgttaatgcgggacagagtcaggctgttattgctttgaatgctaagaggagatgggctgttacggggacgcctattcagaatggttct |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34884483 |
tacaattaagaatgttaatgcgggacagagtcaggctgttattgctttgaatgctaagaggagatgggctgttacggggacgcctattcagaatggttct |
34884384 |
T |
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| Q |
201 |
tatgatttgttttctcttatggcttttttgcattttgagccgttttctattaagagttattggcaaagcttggttcagcgacctcttaatcaaggaaaac |
300 |
Q |
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| T |
34884383 |
tatgatttgttttctcttatggcttttttgcattttgagccgttttctattaagagttattggcaaagcttggttcagcgacctcttaatcaaggaaaac |
34884284 |
T |
|
| Q |
301 |
agactgggatgagtcgattgcaggtacaattcgataacaatgtattgatacttaaaaggtcattctttacttgcatgtgtaggggattacataaataaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34884283 |
agactgggatgagtcgattgcaggtacaattcgataacaatgtaatgattcttaaagggtcattctttacttgcatgtgtaggggactacataaataaac |
34884184 |
T |
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| Q |
401 |
tattagtttccttttgctccataaataaattgaatttgaatttcagtgtttgtgagttgtgaccaatta |
469 |
Q |
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| T |
34884183 |
tattagtttccttttgctccataaataaattgaatttgaatttcagtgtttgtgagttgtgaccaatta |
34884115 |
T |
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