View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3812_high_20 (Length: 236)
Name: NF3812_high_20
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36954982 - 36955202
Alignment:
| Q |
1 |
ccccatcaatcccttgaacagaaatcctcccatcggtataaatatccggatcaaacaaataacccgacccatcaccatctccaaatttaacagacccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36954982 |
ccccatcaatcccttgaacagaaatcctcccatcggtataaatatccggatcaaacaaataacccgacccatcaccatctccaaatttaacagacccatc |
36955081 |
T |
|
| Q |
101 |
agcttcctgagccacaaccttatacttcaacctcaaagtctcatacttaaccttcccaaatctcctaacagcattatacatactctcttccgtttgatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955082 |
agcttcctgagccacaaccttatacttcaacctcaaagtctcatacctaaccttcccaaatctcctaacagcattatacatactctcttccgtttgatac |
36955181 |
T |
|
| Q |
201 |
tcagggataatatggtaatac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36955182 |
tcagggataatatggtaatac |
36955202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 17749303 - 17749101
Alignment:
| Q |
3 |
ccatcaatcccttgaacagaaatcctcccatcggtataaatatccggatcaaacaaataacccgacccatcaccatctccaaatttaacagacccatcag |
102 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||| || |||||||| |||||||||| |
|
|
| T |
17749303 |
ccatcaatcccttgcacagaaatcctcccatccgtataaatatccgggtcaaacaaatatgccgaaccatcaccatgcccgaatttaaccgacccatcag |
17749204 |
T |
|
| Q |
103 |
cttcctgagccacaaccttatacttcaacctcaaagtctcatacttaaccttcccaaatctcctaacagcattatacatactctcttccgtttgatactc |
202 |
Q |
| |
|
|||| | ||| ||||||||| ||| |||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17749203 |
cttcttcagcatcaaccttatgaggcaatctcaaagtatcatacctcaccttcccaaatcttctaacagcattatacatactctcttcagtttgatactc |
17749104 |
T |
|
| Q |
203 |
agg |
205 |
Q |
| |
|
||| |
|
|
| T |
17749103 |
agg |
17749101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 43480067 - 43480275
Alignment:
| Q |
6 |
tcaatcccttgaacagaaatcctcccatcggtataaatatccggatcaaacaaataacccgacccatcaccatctccaaatttaacagacccatcagctt |
105 |
Q |
| |
|
||||| |||||||| ||||| || || ||||| |||||||| ||||||||||||||| | || |||||| | |||||||||||||| || |||| || |
|
|
| T |
43480067 |
tcaataccttgaacggaaattctaccgtcggtgtaaatatcaggatcaaacaaataagcagaagaatcaccgtgaccaaatttaacagaaccgtcagatt |
43480166 |
T |
|
| Q |
106 |
cctgagccacaaccttatacttcaacctcaaagtctcatacttaaccttcccaaatctcctaacagcattatacatactctcttccgtttgatactcagg |
205 |
Q |
| |
|
||||||| |||||||||| ||| | ||| || ||||| ||| ||||||||||| ||||| || |||||||||||||| || |||||||||||||| |
|
|
| T |
43480167 |
cctgagcaacaaccttatggggcaaacgcaacgtatcataactaattttcccaaatcttctaacggcgttatacatactctcctcagtttgatactcagg |
43480266 |
T |
|
| Q |
206 |
gataatatg |
214 |
Q |
| |
|
|| ||||| |
|
|
| T |
43480267 |
aattatatg |
43480275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University