View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_high_4 (Length: 406)
Name: NF3812_high_4
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 47544737 - 47544362
Alignment:
| Q |
18 |
caccgaggttgaatctcgatcatccgaacttaatctaagtagtcaccgatgttctaactgtgtaagcttaaggcatttcggtttgcagagagtattgatc |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||| |||||||||||||| |
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| T |
47544737 |
caccgaggttgaatctcgatcatccaaacttaatctaagtagtctccgatgttctgactgcgtaagcttaaggcattccggtttggagagagtattgatc |
47544638 |
T |
|
| Q |
118 |
caagtagtaggtttctataacaagttttactagtaaagtagttaaatcaaggacttaccttcgcttttattgtttcaaaatcagcgtttaatattctgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544637 |
caagtagtaggtttctataacaagttttactagtaaagtagttaaatcaaggacttaccttcgcttttattgtttcaaaatcagcgtttaatattctgtt |
47544538 |
T |
|
| Q |
218 |
ctcaacagcagaattgttatatttttggtccacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagatttgaaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544537 |
ctcaacagcagaattgttatatttttggtccacatctgaaaaatgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagatttgaaa |
47544438 |
T |
|
| Q |
318 |
gactaattaggatggatacagagatcagataagagaaggcataagacttggatttaaaaagcatgcatgcagacct |
393 |
Q |
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| T |
47544437 |
gactaattaggatggatacagagatcagataagagaaggcataagacttggatttaaaaagcatgcatgcagacct |
47544362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 47528627 - 47528335
Alignment:
| Q |
18 |
caccgaggttgaatctcgatcatccgaacttaatctaagtagtcaccgatgttctaactgtgtaagcttaaggcatttcggtttgcagagagtattgatc |
117 |
Q |
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||||||||||||||||| | ||||||| ||||||||||||||||||| |||| || |||| |||| || |||||||| | ||||||||| | |||||| |
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| T |
47528627 |
caccgaggttgaatctcaagcatccgatcttaatctaagtagtcaccaatgtgctgactgcgtaaactcaaggcatt-caaattgcagagaattttgatc |
47528529 |
T |
|
| Q |
118 |
caagtagtaggtttctataacaagttttactagtaaagtagttaaatcaaggacttaccttcgcttttattgtttcaaaatcagcgtttaatattctgtt |
217 |
Q |
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|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| |||||||||||||| |
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| T |
47528528 |
caagtagtaggcttctataaccagttttactagtaaagtagttaaatcaaggacttaccttcgctcttaatgtttcaacatcagcttttaatattctgtt |
47528429 |
T |
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| Q |
218 |
ctcaacagcagaattgttatatttttggtccacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagat |
311 |
Q |
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||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
47528428 |
gtcaacagcagaattgttgaatttttgggtcacatctgttaaacgctttaacaatgaagaattttcacctcttaattcagaaacctaataagat |
47528335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 47537902 - 47537849
Alignment:
| Q |
308 |
agatttgaaagactaattaggatggatacagagatcagataagagaaggcataa |
361 |
Q |
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|||||| |||||||||||| ||||||||||||||||||| || ||||||||||| |
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| T |
47537902 |
agatttaaaagactaattaagatggatacagagatcagagaatagaaggcataa |
47537849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 47538239 - 47538183
Alignment:
| Q |
248 |
cacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagaccta |
304 |
Q |
| |
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||||||||| |||||| ||||||| ||||||| ||||||| |||||||||||||||| |
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| T |
47538239 |
cacatctgataaacgcgtcaacaacgaagaatgttcaccttttaatgtagagaccta |
47538183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 36007348 - 36007469
Alignment:
| Q |
172 |
ttaccttcgcttttattgtttcaaaatcagcgtttaatattctgttctcaacagcagaattgttatatttttggtccacatctgaaaaacgcttcaacaa |
271 |
Q |
| |
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||||||| ||| ||| ||||||| |||||| || | || |||||| ||||||||||||| | || ||||||| |||||| | || |||||| | ||| |
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| T |
36007348 |
ttacctttgctcttaacgtttcaacatcagctttcagtactctgttgtcaacagcagaatcagtgtacttttggttcacatcagtaagacgctttaccaa |
36007447 |
T |
|
| Q |
272 |
tgaagaattttcacctcttaat |
293 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
36007448 |
ggtagaattttcacctcttaat |
36007469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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