View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_high_7 (Length: 341)
Name: NF3812_high_7
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_7 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 47650065 - 47650395
Alignment:
| Q |
1 |
agttatcaagtcaatgacaaatataccaacaaaaggagatttgatattttatattttaccgcatcatagctaacggcttgaaatgacttccttccacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650065 |
agttatcaagtcaatgacaaatataccaacaaaaggagatttgatattttatattttaccgcatcatagctaacggcttgaaatgacttccttccacatc |
47650164 |
T |
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| Q |
101 |
tatgatttataacttgtttagatttatttgatttgttcctgttactaatttcctgtaaataatacaagtagaaatatcgtatatgtttacgtataaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47650165 |
tatgatttataacttgtttagatttatttgatttgttcctgtaactaatttcctgtaaataatacaagtagaaatatagtatatgtttacgtataaaatt |
47650264 |
T |
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| Q |
201 |
aaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatctaccaagtacttccaatcttcgtcacttaaat |
300 |
Q |
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| T |
47650265 |
aaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatctaccaagtacttccaatcttcgtcacttaaat |
47650364 |
T |
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| Q |
301 |
catctggtttatgttccaaggctatctcatt |
331 |
Q |
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| T |
47650365 |
catctggtttatgttccaaggctatctcatt |
47650395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 172 - 331
Target Start/End: Complemental strand, 170641 - 170482
Alignment:
| Q |
172 |
aaatatcgtatatgtttacgtataaaattaaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatctac |
271 |
Q |
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|||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
170641 |
aaatatagtagatgtttacgtatagaattaaattgcctatatttatatagtaaatataatacaaacatacattgaattcaggacttgaaaaataatctac |
170542 |
T |
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| Q |
272 |
caagtacttccaatcttcgtcacttaaatcatctggtttatgttccaaggctatctcatt |
331 |
Q |
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| T |
170541 |
caagtacttccaatcttcgtcacttaaatcatctggtttatgttccaaagctatctcatt |
170482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 170758 - 170660
Alignment:
| Q |
1 |
agttatcaagtcaatgacaaatataccaacaaaa-ggagatttgatattttatattttaccgcatcatagctaacggcttgaaatgacttccttccaca |
98 |
Q |
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|||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
170758 |
agttatcaagtcaatgacaaatatactaggaaaaaggagatttgatattatatattttaccgcgtcatagctaacagcttgaaatgacttccttccaca |
170660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30754200 - 30754353
Alignment:
| Q |
1 |
agttatcaagtcaatgacaaatataccaacaaaag-gagatttgatatttt---atattttaccgcatcatagctaacggcttgaaatgacttccttcca |
96 |
Q |
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||||||||||||||||| ||||||||||| ||||| ||||||| ||||||| ||||| |||||| ||||||||||| |||||||| | ||||||||| |
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| T |
30754200 |
agttatcaagtcaatgataaatataccaaaaaaagagagattttatatttttttatattataccgcgtcatagctaacaacttgaaataaattccttcca |
30754299 |
T |
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| Q |
97 |
catctatgatttataacttgtttagatttatttgatttgttcctgttactaatt |
150 |
Q |
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| T |
30754300 |
cgtctacaattaataacttgtttagacttatttaatttgttccttttactaatt |
30754353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 37332844 - 37332920
Alignment:
| Q |
101 |
tatgatttataacttgtttagatttatttgatttgttcctgttactaatttcctgtaaataatacaagtagaaatat |
177 |
Q |
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||||||| ||||||||||| | |||||||||||||||||| | |||||| |||||||||||||||| ||||||||| |
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| T |
37332844 |
tatgattaataacttgttttgctttatttgatttgttcctttcgctaattgcctgtaaataatacaaatagaaatat |
37332920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 92224 - 92276
Alignment:
| Q |
1 |
agttatcaagtcaatgacaaatataccaacaaaa--ggagatttgatatttta |
51 |
Q |
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||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
92224 |
agttatcaagtcaatgataaatataccaaaaaaaagggagatttgatatttta |
92276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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