View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3812_high_9 (Length: 311)
Name: NF3812_high_9
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 46 - 292
Target Start/End: Complemental strand, 47591574 - 47591328
Alignment:
| Q |
46 |
ggcaaaaagagagagagaaacaaacgaataacactagaatttgtaaactgtttgtccctttactcactcctttcgccttcttattttatctttatgtgaa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47591574 |
ggcaaaaagagagagagaaacaaacgaatcacactagaatttgtaaactgtttgtccctttactcactcctttcgccttcttattttatctttatgtgaa |
47591475 |
T |
|
| Q |
146 |
tgaaatcaatatttgccagttggctttgtgtgcatgtgtactacagtgtcagttagtgtagtaaactgcattgggtgagtgattgagagagagaatcaag |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47591474 |
tgaaatcaatatttgccagttggctttgtgtgcatgtgtactacagtgtcagttagtgtagtaaactgcattgagtgagtgattgagagagagaatcaag |
47591375 |
T |
|
| Q |
246 |
tgaagagaaagagatattatacatacatagcagaattaccaattacc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47591374 |
tgaagagaaagagatattatacatacatagcagaattaccaattacc |
47591328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University