View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_low_20 (Length: 236)
Name: NF3812_low_20
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_low_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 20475383 - 20475603
Alignment:
| Q |
16 |
gatatggtttcaagttttcatattagcaagaggtctaatgaaataatgcagaagaaaaccaccaatatcttgtaattcttatcgatacagaaagtttgga |
115 |
Q |
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| T |
20475383 |
gatatggtttcaagttttcatattagcaacaggtctaatgaaataatgcagaagaaaaccaccaatatcttgtaattcttatcgatacaaaaagtttgga |
20475482 |
T |
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| Q |
116 |
gcaaatgaaataaatagcaaatggagaaacaaaaattaactcaggttattttatctgcaataagttcaaaactaattgacataaaattaaaacatcataa |
215 |
Q |
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| T |
20475483 |
gcaaatgaaataaatagcaaatggagaaacaaaaattaactcagtttattttatctgcaataagttcaaaactaattgacataaaattaaaacatcataa |
20475582 |
T |
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| Q |
216 |
tccaatctaaagattttgatc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
20475583 |
tccaatctaaagattttgatc |
20475603 |
T |
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