View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_low_23 (Length: 229)
Name: NF3812_low_23
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 3699866 - 3699968
Alignment:
| Q |
21 |
gtacaaggcttattgtggggtgaatagttacaaacaataaaaaggatctgcagatatccaacacgaccacaaccaacaacaaaactacatatagcaacaa |
120 |
Q |
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| T |
3699866 |
gtacaaggcttattctggggtgaatagttacaaacaataaaaaggatctgcagatatccaacaccaccacaactaacaacaaaactacatatagcaacaa |
3699965 |
T |
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| Q |
121 |
atg |
123 |
Q |
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||| |
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| T |
3699966 |
atg |
3699968 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 3699968 - 3700021
Alignment:
| Q |
166 |
gcaactcacgcactaaacagaacacaaaactgaagctacaagctacaattgggt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3699968 |
gcaactcacgcactaaacagaacacaaaactgaagctacaagctacaactgggt |
3700021 |
T |
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