View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_low_24 (Length: 221)
Name: NF3812_low_24
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 3762843 - 3762652
Alignment:
| Q |
12 |
tagattatactggcacgacatactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgctttt |
111 |
Q |
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| T |
3762843 |
tagattctactggcatgacatactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgctttt |
3762744 |
T |
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| Q |
112 |
ggtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttagaaaagctcaaggattctatgcatctgc |
203 |
Q |
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| T |
3762743 |
ggtttagtccgcatgattgacaaccctttgactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgc |
3762652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 3755724 - 3755540
Alignment:
| Q |
13 |
agattatactggcacgacatactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttg |
112 |
Q |
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| T |
3755724 |
agattctactggcacgacatagtgagtggaaaaaaccctacttcagttgcagttgtcccaccaccaatgaaactaaactcaacc------actgcctttg |
3755631 |
T |
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| Q |
113 |
gtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttagaaaagctcaaggattctatgcatctgc |
203 |
Q |
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| T |
3755630 |
gttcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgc |
3755540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 3781143 - 3781045
Alignment:
| Q |
106 |
gcttttggtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttagaaaagctcaaggattctatgcatctgct |
204 |
Q |
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| T |
3781143 |
gcttttggtttggttaacatgattgacaaccctttaactttaggaccagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgct |
3781045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 3776828 - 3776732
Alignment:
| Q |
108 |
ttttggtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttagaaaagctcaaggattctatgcatctgct |
204 |
Q |
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| T |
3776828 |
ttttggtttagttagcatgattgacaaccctttaactttaggacccgaattgagttctaaacttgttggtagagctcaaggattctatgcatctgct |
3776732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 3771396 - 3771304
Alignment:
| Q |
105 |
tgcttttggtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttagaaaagctcaaggattctatgc |
197 |
Q |
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| T |
3771396 |
tgcttttggttcagtccgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgc |
3771304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 3745952 - 3745856
Alignment:
| Q |
107 |
cttttggtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttagaaaagctcaaggattctatgcatctgc |
203 |
Q |
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| T |
3745952 |
cttttggtttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgc |
3745856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 3767162 - 3767068
Alignment:
| Q |
109 |
tttggtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttagaaaagctcaaggattctatgcatctgc |
203 |
Q |
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| T |
3767162 |
tttggttcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgc |
3767068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 3751814 - 3751673
Alignment:
| Q |
56 |
caattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaaccctttgactttaggaccaga |
155 |
Q |
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| T |
3751814 |
caattacaattgttccaccaccattgaagctaaacacaacca--ctta----ttttggttcagtcaacatgtttgatgaccctttgactataggaccaca |
3751721 |
T |
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| Q |
156 |
actgagttctaaacttgttagaaaagctcaaggattctatgcatctgc |
203 |
Q |
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| T |
3751720 |
attgagttctaagcttgttggaaaagctcaaggtttctatgcatctgc |
3751673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 25985369 - 25985461
Alignment:
| Q |
105 |
tgcttttggtttagtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttagaaaagctcaaggattctatgc |
197 |
Q |
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| T |
25985369 |
tgcttttggtttagttaacatgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgc |
25985461 |
T |
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