View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_low_6 (Length: 391)
Name: NF3812_low_6
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 5688730 - 5688376
Alignment:
| Q |
1 |
tctttcaagtatgagctataaaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttannnnnnngaaaatatta |
100 |
Q |
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| T |
5688730 |
tctttcaagtacgagctataaaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttatttttttgaaaatatta |
5688631 |
T |
|
| Q |
101 |
taaagactctcacaaaatttcttataaacattattttgnnnnnnnntctgagactatattttatgattcaaactctacattttattagatttggcgggct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5688630 |
taaagactctcacaaaatttcttataaacattattttgaaaaaaaatctgagactatattttatggttcaaactctacattttattagatttggcgggct |
5688531 |
T |
|
| Q |
201 |
agcccatttttacaactctaaatatgtatgtggaacctgtaagtgaagttggtagtgatggaggtgaagttgtgcgtcttagaccagccttttgtttact |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5688530 |
agcccatttttaca---------------gtggaacctgtaagtgaagttggtagtgatggaggtgaagtt------------ccagccttttgtttact |
5688458 |
T |
|
| Q |
301 |
cataatgttgtactggcgggagctgcaaaccatccccagccataagaaatgattgtcattagttagaattatcgagaattat |
382 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
5688457 |
cataatgttgtactggcgggagctgcaaaccatcccccgccataagaaatgattgtcattagttcgaattatcgaggattat |
5688376 |
T |
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