View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_low_7 (Length: 375)
Name: NF3812_low_7
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 209 - 351
Target Start/End: Original strand, 6581813 - 6581954
Alignment:
| Q |
209 |
agttcagtttgatagcttagttggtgatttttgagtgaaataatattttcaatattcaatcaattcaaattgtagttttatttaatagattatgagaatt |
308 |
Q |
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| T |
6581813 |
agttcaatttgataacttagttggtgagttttgagtgaaataatattttcaatattcagttaatttaaattgtagtttt-gttaatagattatgagaatt |
6581911 |
T |
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| Q |
309 |
tgaaagttttaaacaaaaaagagaaacaacaaagagacttaat |
351 |
Q |
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| T |
6581912 |
tgaaagttttaaacaaaaaagagaaacgagaaagagacttaat |
6581954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 6758002 - 6758091
Alignment:
| Q |
262 |
attcaatcaattcaaattgtagttttatttaatagattatgagaatttgaaagttttaaacaaaaaagagaaacaacaaagagacttaat |
351 |
Q |
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| T |
6758002 |
attcaatcaattcaaattgtagttctttttaatagattatgagaatttgaaagttttaaacaaaaaagaaaaacaacaaagagacttaat |
6758091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 6660093 - 6660182
Alignment:
| Q |
262 |
attcaatcaattcaaattgtagttttatttaatagattatgagaatttgaaagttttaaacaaaaaagagaaacaacaaagagacttaat |
351 |
Q |
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| T |
6660093 |
attcaatcaattcaaattgtagttctttttaataaattatgagaatttgaaagttttaaacaaaaaagaaaaacaacaaagagacttaat |
6660182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 6740495 - 6740584
Alignment:
| Q |
262 |
attcaatcaattcaaattgtagttttatttaatagattatgagaatttgaaagttttaaacaaaaaagagaaacaacaaagagacttaat |
351 |
Q |
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| T |
6740495 |
attcaatcaattcaaattgtagttctttttaataaattatgagaatttgaaagttttaaacaaaaaagaaaaacaacaaagagacttaat |
6740584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 6581606 - 6581675
Alignment:
| Q |
56 |
atataattatgtggtca--gtgctttgttacaattattaagtgggccagcgtagaattagatgttttccaatt |
126 |
Q |
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| T |
6581606 |
atataattatgtggacacagtgctttgttacaatta---agtgggtcagagtagaattagatgttttccaatt |
6581675 |
T |
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