View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_1 (Length: 704)
Name: NF3813_high_1
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 9 - 685
Target Start/End: Original strand, 47687856 - 47688532
Alignment:
| Q |
9 |
agcagagaggagcacactacatgcaggctcagcagatgacacaacaacaacaactaatggctgcacgttcctcccttttatttgcacagcaacagcagca |
108 |
Q |
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| T |
47687856 |
agcagggaggagcacactacatgcaggctcagcagatgacacaacaacaacaactaatggctgcacgttcctcccttttatttgcacagcaacagcagca |
47687955 |
T |
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| Q |
109 |
gcaaccttactcagcccttcaacagcaccaacttggaggcggtggaacttcaggactacacatgatgcaaagcgaagcctgtagcaatatgaacgtggga |
208 |
Q |
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| T |
47687956 |
gcaaccttactcagcccttcaacagcaccaacttggaggcggtggaacttcaggactacacatgatgcaaagcgaagcctgtagcaatatgaacgtggga |
47688055 |
T |
|
| Q |
209 |
ggaggtagtagctcaacattgggttctggtggtgggtttcctgacttcatccgcggtggaggagagggtttgcacagaagtcttattggaggtagtggca |
308 |
Q |
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| T |
47688056 |
ggaagtagtagctcaacattgggttctggtggtgggtttcctgacttcatccgcggtggaggagagggtttgcacagaagtcttattggaggtagtggca |
47688155 |
T |
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| Q |
309 |
agcaacaagagattgggatgaattcttcatctgatcaaggtcgaggcggcggtggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaa |
408 |
Q |
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| T |
47688156 |
agcaacaagagattgggatgagttcttcatctgatcaaggtcgaggcggcggtggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaa |
47688255 |
T |
|
| Q |
409 |
ctagtactcaattagctgttcagatcgaatttggtttaattagttatcttgatccaattcggatgcattttaacttttatgatcaattagttaattagtt |
508 |
Q |
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| T |
47688256 |
ctagtactcaattagctgttcagatcgaatttggtttaattagttatcttgatccaattcggatgcattttaacttttatgatcaattagttaattagtt |
47688355 |
T |
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| Q |
509 |
agctaggagaactattaatcaagatcaattagctagctaggtgaaaaacttaattctgcttcttaattagataatccttgtttatcttgtgcttaattaa |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47688356 |
agctaggagaactattaatcaagatcaattagctagctaggtgaaaaacttaattctgcttcttaattagataatccttgtttatcttgtgcttaattaa |
47688455 |
T |
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| Q |
609 |
ggtaaactatttggtgagatttgaattaacttgcatcaaatgaatgttagcttttgctttgcctaatctatgcctct |
685 |
Q |
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| T |
47688456 |
ggtaaactatttggtgagatttgaattaacttgcatcaaatgaatgttagcttttgctttgcctaatctatgcctct |
47688532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 35836358 - 35836306
Alignment:
| Q |
361 |
tggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaactagt |
413 |
Q |
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| T |
35836358 |
tggtgatggcggcgaaacactttacctgaaatcttctggtgatgggaattagt |
35836306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 35836645 - 35836602
Alignment:
| Q |
35 |
gctcagcagatgacacaacaacaacaactaatggctgcacgttcctc |
81 |
Q |
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| T |
35836645 |
gctcagcagatgacacaacaacaat---taatggctgcacgttcctc |
35836602 |
T |
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