View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3813_high_13 (Length: 483)
Name: NF3813_high_13
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_13 |
 | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0741 (1 HSPs) |
| | |
|
| [»] scaffold0073 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0065 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 42361 - 41899
Alignment:
| Q |
18 |
gattatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctccaatgttccaaaaaa--tgatattcatataaaccgtggaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
42361 |
gattatgtagccgacaccaatcagagaaagcaagtcagg--tcattattaccaattctccgatgttccaaaaaaaatgatattcatttaaacggtggaag |
42264 |
T |
|
| Q |
116 |
aggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat----gagacttggaaacaacctctgtaaatggtacctcggttgctgctgc |
211 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||| | | |||||||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
42263 |
aggaccctgagagtgggttttatataaaactttttgcaaattctttttttttctgagacttggaaacaacatttgtaaatggtacctcggttgttgctgc |
42164 |
T |
|
| Q |
212 |
ctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagtttta |
311 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||| |
|
|
| T |
42163 |
ctttgatagccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccctccggagccacaatactactgatgtcaagagtttta |
42064 |
T |
|
| Q |
312 |
ttttttacggcagataaattagatatagtatttccctcaag---atttgcaactatatcatcggaaacattctcaagctgcatactaaaagtattattct |
408 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42063 |
ttttttacgggagataaaaaagatatagtatttccctcaagattattagcaactatatcatcggaaacattctcaagctgcatactaaaattattattct |
41964 |
T |
|
| Q |
409 |
gaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtctgtg |
473 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
41963 |
gaataacaggactatgagaagtatgaattatcacaggtgacggaattcctcccggagtgtttgtg |
41899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 26177567 - 26177127
Alignment:
| Q |
18 |
gattatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctccaatgttccaaaaaatgatattcatataaaccgtggaagag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26177567 |
gattatgtagccgacaccaatcagagaaagcaagtcaggaatcatgattaccaattctccgatgttccaaaaaatgatattcatttaaacggtggaagag |
26177468 |
T |
|
| Q |
118 |
gaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat-----gagacttggaaacaacctctgtaaatggtacctcggttgctgctgcc |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
26177467 |
gaccctgagagcgggttttatacgaaactttttgcatattcttttttttttctgagacttggaaacaacctgtgtaaatggtacctcggttgttgctgcc |
26177368 |
T |
|
| Q |
213 |
tttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagttttat |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
26177367 |
tttgatagccaagtgtgcataaaatctaagtctttttgttgcaccggatctatcttagaatcctccggagccacaatactactgatatcaagagttttat |
26177268 |
T |
|
| Q |
313 |
tttttacggcagataaattagatatagtatttccctcaagatttgcaactatatcatcggaaacattctcaagctgcatactaaaagtattattctgaat |
412 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
26177267 |
tttttacgggagataaaacagatatagtatttccctcaagat-------tatttc-----------cctcaagctgcatactaaaattattattctgaat |
26177186 |
T |
|
| Q |
413 |
aacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtctgtgc |
474 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
26177185 |
aacaggact---agaagtatgagttaccacaggtgacggaattcctcccgtaatgtctgtgc |
26177127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 19160235 - 19159943
Alignment:
| Q |
19 |
attatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctccaa-tgttccaaaaaatgatattcatataaaccgtggaagag |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||| ||||||||||| || | | |||||||| || ||||| || ||||| ||||||||| |
|
|
| T |
19160235 |
attatgtagccgacacatatcagagaaagcaagtcggtaatcaatattaccaatttcccgagttttccaaaagataatatttatttaaacggtggaagag |
19160136 |
T |
|
| Q |
118 |
gaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat---gagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctt |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| | |||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19160135 |
gaccctgagagcgggttttatatggaactttttccatatttttcttcttctgagaattggaaacaacctctataaatggtacctcggttgctgctgcctt |
19160036 |
T |
|
| Q |
215 |
tgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagt |
307 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||||| |||| |
|
|
| T |
19160035 |
tgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccctccggagccacaatgctactgatatcatgagt |
19159943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 20759634 - 20759342
Alignment:
| Q |
19 |
attatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctccaa-tgttccaaaaaatgatattcatataaaccgtggaagag |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||| ||||||||||| || | | |||||||| || ||||| || ||||| ||||||||| |
|
|
| T |
20759634 |
attatgtagccgacacatatcagagaaagcaagtcggtaatcaatattaccaatttcccgagttttccaaaagataatatttatttaaacggtggaagag |
20759535 |
T |
|
| Q |
118 |
gaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat---gagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctt |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| | |||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20759534 |
gaccctgagagcgggttttatatggaactttttccatatttttcttcttctgagaattggaaacaacctctataaatggtacctcggttgctgctgcctt |
20759435 |
T |
|
| Q |
215 |
tgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagt |
307 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||||| |||| |
|
|
| T |
20759434 |
tgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccctccggagccacaatgctactgatatcatgagt |
20759342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 264
Target Start/End: Original strand, 7811146 - 7811328
Alignment:
| Q |
82 |
ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnatgagacttggaaacaac |
181 |
Q |
| |
|
|||||| |||| |||||||| ||||| | ||||||| ||| ||||| |||||||| |||||| |||||| || | | |||||| ||||| || |
|
|
| T |
7811146 |
ttccaagaaataatattcatttaaacggcggaagagtaccttgagaacgggttttgtatgaagcttttttcaaattctttttctaagactttgaaactac |
7811245 |
T |
|
| Q |
182 |
ctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta |
264 |
Q |
| |
|
||||||||||||| | || || | ||||||| | | |||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7811246 |
ctctgtaaatggtgcatcagtcacagctgcctccgctaaccaagtttgcataaaatctaagtctttttgcagcaccggatcta |
7811328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 6670736 - 6670794
Alignment:
| Q |
95 |
tattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
6670736 |
tattcatttaaacggaggaagaggaccctgagagcgggttttgtatgaagccttttgca |
6670794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 7811420 - 7811485
Alignment:
| Q |
353 |
atttgcaactatatcatcggaaacattctcaagctgcatactaaaagtattattctgaataacagg |
418 |
Q |
| |
|
||||| |||||| ||||| |||||||||||||| |||| |||||||||||||| || |||||||| |
|
|
| T |
7811420 |
atttgtaactatctcatcagaaacattctcaagttgcaagctaaaagtattattatgtataacagg |
7811485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 474
Target Start/End: Original strand, 2289567 - 2290030
Alignment:
| Q |
16 |
cagattatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaa |
114 |
Q |
| |
|
|||||||| |||||||| | || ||||||||| || | ||||||||||||||||||| || ||||||||| |||| ||||||||| ||||| |||||| |
|
|
| T |
2289567 |
cagattatctagccgacccatattagagaaagcgagccgagaatcattattaccaattccccgaatgttccataaaaagatattcatttaaacggtggaa |
2289666 |
T |
|
| Q |
115 |
gaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnatg-agacttggaaacaacctctgtaaatggtacctcggttgctgctgcct |
213 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2289667 |
gaggaccctgagagcatgttttatatgaaactttttgcatattctttatttttagacttggaaacaacctctgtaaatggtacctcggttgctgctgcct |
2289766 |
T |
|
| Q |
214 |
ttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagttttatt |
313 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
2289767 |
ttgatagccaagtgttcataaaatctaagtctttttgtagcaccggatctatcttagaaccatctggagccacaatactactgatatcaagagttttatt |
2289866 |
T |
|
| Q |
314 |
ttttacggcagataaattagatatagtatttccctcaagatt---tgcaactatatcatcggaaacattctcaagctgcatactaaaagtattattctga |
410 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
2289867 |
ttttacgagagataaaacagatatagtatttccatccagattatgtgcaactatatcatcgaaaacattctcaagctgcatgctaaaattatgattctga |
2289966 |
T |
|
| Q |
411 |
ataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtctgtgc |
474 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| |
|
|
| T |
2289967 |
ataacaggactatgagaaaaatgagttaccacaagtgatggaattcctcccggagtgtttgtgc |
2290030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 83 - 474
Target Start/End: Original strand, 20304077 - 20304478
Alignment:
| Q |
83 |
tccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat----------gagactt |
172 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
20304077 |
tccaaaacatgatattcatttaaacggtggaagaggaccctgagagcgggttttatatgaaactttttgcatatttttttttttgttttttctgagactt |
20304176 |
T |
|
| Q |
173 |
ggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaa |
272 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20304177 |
ggaaacaacttgtgtaaatggtacctcggtagctgctggctttgatagccaagtgtgcataaaatctaagtctttttgtagcaccagatctatcttagaa |
20304276 |
T |
|
| Q |
273 |
cccttcagaaccacaatactactgatatcaagagttttattttttacggcagataaattagatatagtatttccctcaag---atttgcaactatatcat |
369 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
20304277 |
ccctcgggagccacaatactactgatatcaagagttttattttttacgggagataaaacatatatagtatttccctcaggattattagcaactatatcat |
20304376 |
T |
|
| Q |
370 |
cggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20304377 |
cggaaacattctcaagctgcatactaaaattattattctgaataacaggact---agaagtatgagttaccacaggtgacggaattcctcccggagtgtc |
20304473 |
T |
|
| Q |
470 |
tgtgc |
474 |
Q |
| |
|
||||| |
|
|
| T |
20304474 |
tgtgc |
20304478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 80 - 307
Target Start/End: Complemental strand, 15409134 - 15408904
Alignment:
| Q |
80 |
tgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat---gagacttggaa |
176 |
Q |
| |
|
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||||||||| || |||||||||| | ||||||||||| |
|
|
| T |
15409134 |
tgttccaaaagatgatattcatttagacggtggaagaggaccttgagagcgggttttatatggaattttttgcatatttttcttcttctgagacttggaa |
15409035 |
T |
|
| Q |
177 |
acaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccct |
276 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15409034 |
acaacctctataaatggtacctcggttgctgctgcctttgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccct |
15408935 |
T |
|
| Q |
277 |
tcagaaccacaatactactgatatcaagagt |
307 |
Q |
| |
|
| || ||||||| ||||||||||||||||| |
|
|
| T |
15408934 |
ccggagccacaatgctactgatatcaagagt |
15408904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 3570223 - 3570304
Alignment:
| Q |
55 |
ggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttt |
135 |
Q |
| |
|
|||||||||||||||||| | || || ||||||||||| |||||||| ||||| | |||||||| || ||||||||||||| |
|
|
| T |
3570223 |
ggaatcattattaccaatcccccgaactttccaaaaaataatattcatttaaacggaggaagaggtccttgagagcgggttt |
3570304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 41760648 - 41760719
Alignment:
| Q |
82 |
ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
|||||| |||| |||||||| ||||| |||| | |||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
41760648 |
ttccaataaataatattcatttaaacggtgggcggggaccctgagagcgggttttgtatgcaaccttttgca |
41760719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 51464881 - 51464939
Alignment:
| Q |
95 |
tattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||| |||||| |||||| | ||||||| |
|
|
| T |
51464881 |
tattcatttaaacggaggaagaggaccctgagagctggttttgtatgaagccttttgca |
51464939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 83 - 474
Target Start/End: Original strand, 37634812 - 37635206
Alignment:
| Q |
83 |
tccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat---gagacttggaaaca |
179 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
37634812 |
tccaaaacatgatattcatttaaacggtggaagaggaccatgagagcgggttttatatgaaactttttgcatattcttttttttctgagacttggaaaca |
37634911 |
T |
|
| Q |
180 |
acctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttca |
279 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634912 |
acctgtgtaaatggtacctcggtagctgctgcctttgatagccaagtgtgcataaaatccaagtctttttgtagcaccggatctatcttagaaccctcgg |
37635011 |
T |
|
| Q |
280 |
gaaccacaatactactgatatcaagagttttattttttacggcagataaattagatatagtatttccctcaag---atttgcaactatatcatcggaaac |
376 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
37635012 |
gagccacaatactactgatatcaagagttttattttttacgggagataaaacagatatagtatttccctcaagattattagcaactatatcatcggaaac |
37635111 |
T |
|
| Q |
377 |
attctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtctgtgc |
474 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||||||| || | |||||||||||||||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
37635112 |
attctcaagctgcatactaaaattattattttaaataacatgact---agaagtatgagttaccacaggtgacgaaattcctcccagagtgtctgtgc |
37635206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 25802823 - 25802765
Alignment:
| Q |
95 |
tattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
25802823 |
tattcatttaaacggaggaagaggaccctgagagcgggttttgtatgaagccttttgca |
25802765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 441
Target Start/End: Original strand, 21345766 - 21345846
Alignment:
| Q |
361 |
ctatatcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttacca |
441 |
Q |
| |
|
|||| ||||| || ||||||||||| || || |||||||||||||| |||| |||| |||||||| |||||||||||| |
|
|
| T |
21345766 |
ctatctcatcagatacattctcaagttgaatgctaaaagtattattagtaatagcagggctatgagaaatatgagttacca |
21345846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0741 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 83 - 470
Target Start/End: Complemental strand, 6383 - 5989
Alignment:
| Q |
83 |
tccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat-----gagacttggaaa |
177 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
6383 |
tccaaaacatgatattcatttaaacggtggaagaggaccctgagagcgggttttatatgaaactttttgcatattcttttttttttctgagacttggaaa |
6284 |
T |
|
| Q |
178 |
caacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccctt |
277 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6283 |
caacctgtgtaaatggtacctcggtagctgctgcctttgatagccaagtgtgcataaaatccaagtctttttgtagcaccgaatctatcttagaaccctc |
6184 |
T |
|
| Q |
278 |
cagaaccacaatactactgatatcaagagttttatttttta-cggcagataaattagatatagtatttccctcaagattt----gcaactatatcatcgg |
372 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6183 |
gggagccacaatactattgatatcaagagttttattttttatggggagataaaacagatatagtatttccctcaagatttattagcaactatatcatcgg |
6084 |
T |
|
| Q |
373 |
aaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgtct |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
6083 |
aaacattctcaagctgcatactaaaagtattattctgaataacaggact---agaagtatgagttaccacaggtgacgaaattcctcccagagtgtct |
5989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 79 - 468
Target Start/End: Complemental strand, 25820481 - 25820086
Alignment:
| Q |
79 |
atgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat---gagacttgga |
175 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||| |||| ||||||||||||| | ||||||| || |
|
|
| T |
25820481 |
atgttccaaaaaattatattcatttaaacggtggaagaggaccctgagagcgagttttgtatggaactttttgcatattcttatttttccgagactttga |
25820382 |
T |
|
| Q |
176 |
aacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||| ||||| || |||||||||| |||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
25820381 |
cacaacctctgtaaatggtacctcggttgctgctgctttagatagccaattgcgcataaaatccaagtctttttgtagcaccggatctgtctgagaaccc |
25820282 |
T |
|
| Q |
276 |
ttcagaaccacaatactactgatatcaagagttttattttttacggcagataaattagatatagtatttccctcaa---gatttgcaactatatcatcgg |
372 |
Q |
| |
|
| | | ||||||| |||||||||||||||||||||||||| || | ||||||| | ||||| |||||||||| |||||||| |||||| || | |
|
|
| T |
25820281 |
tccgaagccacaatgctactgatatcaagagttttatttttcacaggagataaaacaacgatagtgtttccctcaatattatttgcaattatatcgtctg |
25820182 |
T |
|
| Q |
373 |
aaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaattccttccggagtgt |
468 |
Q |
| |
|
|||| |||||||| |||||||||||||| | ||| |||||||||||| |||||||| |||||||||| |||||||||||||||| |||| |||| |
|
|
| T |
25820181 |
aaactttctcaagatgcatactaaaagtgtgattatgaataacaggacgatgagaagagtgagttaccataggtgacggaattcctcccggggtgt |
25820086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 33858666 - 33858737
Alignment:
| Q |
82 |
ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
|||||| |||| |||||||| ||||| |||| | |||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
33858666 |
ttccaataaataatattcatttaaacggtgggcggggaccctgagagcgggttttgtatgcaaccttttgca |
33858737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 80 - 307
Target Start/End: Complemental strand, 25823302 - 25823072
Alignment:
| Q |
80 |
tgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat---gagacttggaa |
176 |
Q |
| |
|
|||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||||| |
|
|
| T |
25823302 |
tgttccaaaagatgatattcatttagacggtggaagaggaccctgagagcgggttttatatggaattttttgcatatttttcttcttctgagacttggaa |
25823203 |
T |
|
| Q |
177 |
acaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccct |
276 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25823202 |
acaacctctataaatggtacctcggttgctgctgcctttgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccct |
25823103 |
T |
|
| Q |
277 |
tcagaaccacaatactactgatatcaagagt |
307 |
Q |
| |
|
| || ||||||| ||||||||||||||||| |
|
|
| T |
25823102 |
ccggagccacaatgctactgatatcaagagt |
25823072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 80 - 307
Target Start/End: Complemental strand, 16170996 - 16170767
Alignment:
| Q |
80 |
tgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat---gagacttggaa |
176 |
Q |
| |
|
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||||||||| || |||||||||| | ||||||| ||| |
|
|
| T |
16170996 |
tgttccaaaagatgatattcatttagacggtggaagaggacc-tgagagcgggttttatatggaattttttgcatatttttcttcttctgagacttagaa |
16170898 |
T |
|
| Q |
177 |
acaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaaccct |
276 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16170897 |
ataacctctataaatggtacctcggttgctgctgcctttgatagccaagtgtgcatgaaatctaagtctttttgtaacaccggatctatcttagaaccct |
16170798 |
T |
|
| Q |
277 |
tcagaaccacaatactactgatatcaagagt |
307 |
Q |
| |
|
|| || |||||||||||||||||||| |||| |
|
|
| T |
16170797 |
tcggagccacaatactactgatatcaggagt |
16170767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 21273225 - 21273124
Alignment:
| Q |
55 |
ggaatcattattaccaattctcca-atgttccaaaaaatga--tattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttg |
151 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||| | ||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
21273225 |
ggaatcattattaccaatcccccggatgttccaaaaaaaaaaatattcatttaaacggaggaagaggaccctgagagcgggttttgtatgaagccttttg |
21273126 |
T |
|
| Q |
152 |
ca |
153 |
Q |
| |
|
|| |
|
|
| T |
21273125 |
ca |
21273124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 23667397 - 23667496
Alignment:
| Q |
165 |
tgagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta |
264 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||| | | || ||||||| | ||||||| |||||||||||||| ||||| || | |||||| |||| |
|
|
| T |
23667397 |
tgagacttggaaactacctctttaaatggcacctcattcacagcagcctttgctagccaagtttgcataaaatctaattctttctgcaacaccgggtcta |
23667496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 21862349 - 21862057
Alignment:
| Q |
19 |
attatgtagccgacaccaatcagagaaagcaagtcaggaatcattattaccaat-tctccaatgttccaaaaaatgatattcatataaaccgtggaagag |
117 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| | ||||| |||||||||| || | |||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
21862349 |
attacgtagccgacacatatcagagaaagcaagtcggtaatcaatattaccaatgtcccgggtgttccaaaagatgatattcatttaaatggtggaagag |
21862250 |
T |
|
| Q |
118 |
gaccctgagagcgggttttatatgaaactttttgcatannnnnnnnat---gagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctt |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| || | | ||||||||||||||| |||| ||||||||||||||| |||| || |||| |
|
|
| T |
21862249 |
gaccctgagagcgggttttatatggaacattttccacatttttcttcttctgagacttggaaacaatctctataaatggtacctcggatgctcctacctt |
21862150 |
T |
|
| Q |
215 |
tgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatctatcttagaacccttcagaaccacaatactactgatatcaagagt |
307 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||| ||||| |
|
|
| T |
21862149 |
tgatagccaagtgtgcatgaaatctaagtctttttgtagcaccggatctatcttagaaccctccggagccacaatgttactgatatctagagt |
21862057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 455
Target Start/End: Complemental strand, 15042420 - 15042331
Alignment:
| Q |
366 |
tcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccacaggtgacggaatt |
455 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| |||||||| |||||||||| |||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
15042420 |
tcatcggaaacattctcaagttgcattgtaaatgtattattaataataacaggagtatgagaagtatcagttaccaccggtgtcggaatt |
15042331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 22834162 - 22834223
Alignment:
| Q |
82 |
ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaa |
143 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
22834162 |
ttccaaaaaataatattcatttaaacagtggaagaggaccctgagagcgggttttttatgaa |
22834223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 29807170 - 29807102
Alignment:
| Q |
375 |
acattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccaca |
443 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | | ||||| || | ||||||||||||||||||||| |
|
|
| T |
29807170 |
acattctcaagttgcatactaaaagtattattattattaacaagactgtgagaagtatgagttaccaca |
29807102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 18857093 - 18857023
Alignment:
| Q |
83 |
tccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
|||||||| | |||||||| ||||| | ||||||||||| |||||||||||||| |||||| | ||||||| |
|
|
| T |
18857093 |
tccaaaaactaatattcatttaaacggaggaagaggaccttgagagcgggttttgtatgaagccttttgca |
18857023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 22834252 - 22834348
Alignment:
| Q |
168 |
gacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta |
264 |
Q |
| |
|
||||| ||||| |||||| ||||||| ||||| | | || ||||||| | ||||||| ||||||||||||||||| || || ||||||||||||| |
|
|
| T |
22834252 |
gactttgaaactacctctttaaatggcacctcattcacagcagcctttgctagccaagtttgcataaaatctaagtccttctgcagcaccggatcta |
22834348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 29807320 - 29807281
Alignment:
| Q |
228 |
tgcataaaatctaagtctttttgtagcaccggatctatct |
267 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
29807320 |
tgcataaaatctaagtccttctgtagcaccggatctatct |
29807281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 29807512 - 29807433
Alignment:
| Q |
43 |
gaaagcaagtcaggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggacc |
121 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||| ||||||||| |||| ||||| || ||| | ||||||||||||| |
|
|
| T |
29807512 |
gaaagcaagacgggaatcattattaccaatcctccggatgttccaataaataatatttatttaagcggtggaagaggacc |
29807433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 46137213 - 46137016
Alignment:
| Q |
37 |
atcagagaaagcaagtcaggaatcattattaccaattctcca-atgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttt |
135 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
46137213 |
atcagagaaagcaagtcgggaatcaatattaccaattccccggatgttccaaaaaataatattcatttaaacggtggaagaggaccttgagagcgggttt |
46137114 |
T |
|
| Q |
136 |
tatatgaa----actttttgcatannnnnnnnatgagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtg |
229 |
Q |
| |
|
|||||||| | ||||| | ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
46137113 |
tatatgaatagcatttttttttttttcttcttctgagacttggaaacaacctctataaatgatacctcggttgctgctgtctttgatagccaagtgtg |
46137016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 15199597 - 15199656
Alignment:
| Q |
82 |
ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatg |
141 |
Q |
| |
|
||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
15199597 |
ttccaaaaaataatatacatttaaacggtggaagaggaccctgagagcgggttttgtatg |
15199656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 36776872 - 36776948
Alignment:
| Q |
55 |
ggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcg |
130 |
Q |
| |
|
|||| ||||||||||||| | || ||||||||||||||| ||||| || ||||| | |||||||||||||||||||| |
|
|
| T |
36776872 |
ggaaccattattaccaatcccccgaatgttccaaaaaataatatttatttaaacagaggaagaggaccctgagagcg |
36776948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 9133247 - 9133345
Alignment:
| Q |
57 |
aatcattattaccaattctcca-atgttccaaaaaatg-atattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||| |||||||| ||||| | ||||||||||| |||||||||||||| |||||| | ||||||| |
|
|
| T |
9133247 |
aatcattattaccaatcccccggatgttccaaaaaaaatatattcatttaaacggaggaagaggaccttgagagcgggttttgtatgaagccttttgca |
9133345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 159161 - 159220
Alignment:
| Q |
94 |
atattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||||||| || ||| | ||||||| |
|
|
| T |
159161 |
atattcatttaaacggaggaagaggaccctgagagcgggttttgtaagaacccttttgca |
159220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 15218684 - 15218739
Alignment:
| Q |
81 |
gttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggtttt |
136 |
Q |
| |
|
|||| ||||||| |||||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
15218684 |
gttctaaaaaataatattcatttaaacggtggaagaggaccctgagaatgggtttt |
15218739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 159281 - 159335
Alignment:
| Q |
210 |
gcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta |
264 |
Q |
| |
|
||||||| | ||||||| |||||||||||||||||||| || |||||||| |||| |
|
|
| T |
159281 |
gcctttgctagccaagtttgcataaaatctaagtctttctgcagcaccgggtcta |
159335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 15218954 - 15219034
Alignment:
| Q |
359 |
aactatatcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttac |
439 |
Q |
| |
|
|||||| ||||| || ||||||||||| || || ||||||||||||| | |||| ||||| |||||||| || ||||||| |
|
|
| T |
15218954 |
aactatgtcatcagatacattctcaagttgtatgctaaaagtattatcattaatagcaggactatgagaaataggagttac |
15219034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 1656588 - 1656499
Alignment:
| Q |
55 |
ggaatcattattaccaattctcc-aatgttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaa |
143 |
Q |
| |
|
|||||||||||||||||| | || |||||| ||||||| |||||||| |||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
1656588 |
ggaatcattattaccaatcccccgaatgtttaaaaaaataatattcatttaaagaatagaagaggtccctgagagcgggttttatatgaa |
1656499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 21278961 - 21278862
Alignment:
| Q |
165 |
tgagacttggaaacaacctctgtaaatggtacctcggttgctgctgcctttgatggccaagtgtgcataaaatctaagtctttttgtagcaccggatcta |
264 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||||| | | || |||||| | ||||||| |||||||||||||||||||| || |||||||| |||| |
|
|
| T |
21278961 |
tgagactttgaaactacctctttaaatggcacctcattcacagcatcctttgctagccaagtttgcataaaatctaagtctttctgcagcaccgggtcta |
21278862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 31924404 - 31924333
Alignment:
| Q |
82 |
ttccaaaaaatgatattcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgca |
153 |
Q |
| |
|
|||||| |||| |||||||| ||||| |||| | |||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
31924404 |
ttccaataaataatattcatttaaacggtgggcggggaccctgagagcgggttttgtatgcaaccttttgca |
31924333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 40606 - 40706
Alignment:
| Q |
55 |
ggaatcattattaccaattctcc-aatgttccaaaaaatgat-attcatataaaccgtggaagaggaccctgagagcgggttttatatgaaactttttgc |
152 |
Q |
| |
|
|||||||||||||||||| | || ||| |||||||| | || |||||| ||||| |||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
40606 |
ggaatcattattaccaatcccccgaatcttccaaaacaaaattattcatttaaacgaaggaagaggaccctgagagcgggttttgtatgaagccttttgc |
40705 |
T |
|
| Q |
153 |
a |
153 |
Q |
| |
|
| |
|
|
| T |
40706 |
a |
40706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 61041 - 60965
Alignment:
| Q |
366 |
tcatcggaaacattctcaagctgcatactaaaagtattattctgaataacaggattatgagaagtatgagttaccac |
442 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| |||||||| ||||| |||| ||||||||||| ||||||||| |
|
|
| T |
61041 |
tcatcggacacattctcaagttgcatgctaaatgtattattaataataaaaggagtatgagaagtagcagttaccac |
60965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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