View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3813_high_16 (Length: 462)

Name: NF3813_high_16
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3813_high_16
NF3813_high_16
[»] chr3 (16 HSPs)
chr3 (191-447)||(54111792-54112048)
chr3 (49-164)||(17227881-17227996)
chr3 (191-253)||(54113636-54113698)
chr3 (194-276)||(54112252-54112334)
chr3 (116-166)||(19132812-19132862)
chr3 (111-164)||(17226968-17227021)
chr3 (96-157)||(37105058-37105118)
chr3 (116-164)||(36750437-36750485)
chr3 (116-164)||(43638078-43638126)
chr3 (108-150)||(33454880-33454922)
chr3 (112-150)||(41584567-41584605)
chr3 (118-164)||(41755499-41755545)
chr3 (116-165)||(30847853-30847902)
chr3 (116-165)||(32489945-32489994)
chr3 (96-153)||(37104363-37104419)
chr3 (123-159)||(32490202-32490238)
[»] chr6 (18 HSPs)
chr6 (1-164)||(9574456-9574619)
chr6 (191-286)||(5251356-5251450)
chr6 (97-164)||(7531829-7531896)
chr6 (97-164)||(7532421-7532488)
chr6 (116-164)||(15083318-15083366)
chr6 (97-158)||(26227389-26227450)
chr6 (116-164)||(7193338-7193386)
chr6 (116-164)||(14337557-14337605)
chr6 (116-164)||(33480628-33480676)
chr6 (116-159)||(22582479-22582522)
chr6 (116-159)||(22587310-22587353)
chr6 (195-277)||(5251547-5251628)
chr6 (116-165)||(3543063-3543112)
chr6 (116-157)||(33018416-33018457)
chr6 (116-164)||(7158435-7158483)
chr6 (116-164)||(7159341-7159389)
chr6 (116-164)||(22579935-22579983)
chr6 (116-164)||(24125972-24126020)
[»] chr4 (29 HSPs)
chr4 (1-164)||(55159180-55159343)
chr4 (26-164)||(47199305-47199443)
chr4 (26-164)||(28684142-28684280)
chr4 (5-164)||(43738362-43738521)
chr4 (94-164)||(25371523-25371593)
chr4 (96-157)||(37275095-37275155)
chr4 (12-139)||(47524092-47524218)
chr4 (97-163)||(3847887-3847953)
chr4 (111-164)||(47198605-47198658)
chr4 (109-159)||(3848571-3848621)
chr4 (116-164)||(38694954-38695002)
chr4 (111-164)||(55160062-55160114)
chr4 (116-164)||(11417687-11417735)
chr4 (116-164)||(11417937-11417985)
chr4 (116-164)||(21165447-21165495)
chr4 (116-164)||(29651332-29651380)
chr4 (116-164)||(30478309-30478357)
chr4 (116-164)||(36865717-36865765)
chr4 (116-164)||(48013317-48013365)
chr4 (116-158)||(36864823-36864865)
chr4 (124-169)||(10424118-10424163)
chr4 (116-165)||(39523271-39523320)
chr4 (118-159)||(53600184-53600225)
chr4 (116-164)||(6246784-6246832)
chr4 (116-164)||(10425059-10425107)
chr4 (116-164)||(26611283-26611331)
chr4 (128-164)||(28683508-28683544)
chr4 (116-164)||(31836460-31836508)
chr4 (116-164)||(45235960-45236008)
[»] chr5 (22 HSPs)
chr5 (26-164)||(13654933-13655071)
chr5 (116-171)||(26688159-26688214)
chr5 (116-171)||(26957890-26957945)
chr5 (97-160)||(39167422-39167484)
chr5 (111-164)||(13655655-13655708)
chr5 (116-164)||(7625473-7625521)
chr5 (116-164)||(8040444-8040492)
chr5 (116-164)||(8204120-8204168)
chr5 (116-164)||(15184017-15184065)
chr5 (116-164)||(33002816-33002864)
chr5 (115-150)||(26316934-26316969)
chr5 (117-164)||(39950404-39950451)
chr5 (117-166)||(2319264-2319313)
chr5 (96-164)||(4607116-4607184)
chr5 (110-158)||(4607470-4607518)
chr5 (116-164)||(7626023-7626071)
chr5 (116-164)||(13404703-13404751)
chr5 (116-164)||(14553667-14553715)
chr5 (116-164)||(26688741-26688789)
chr5 (116-164)||(26958472-26958520)
chr5 (123-159)||(33001937-33001973)
chr5 (116-164)||(36626630-36626678)
[»] chr8 (28 HSPs)
chr8 (24-166)||(44752478-44752620)
chr8 (24-165)||(39254786-39254929)
chr8 (26-165)||(62150-62289)
chr8 (5-165)||(216392-216552)
chr8 (5-165)||(692952-693112)
chr8 (5-165)||(697161-697321)
chr8 (5-165)||(730015-730175)
chr8 (5-165)||(853910-854070)
chr8 (26-152)||(1366523-1366649)
chr8 (24-164)||(12351068-12351203)
chr8 (111-164)||(61454-61507)
chr8 (111-164)||(1365829-1365882)
chr8 (108-164)||(44751608-44751664)
chr8 (112-164)||(39255748-39255800)
chr8 (116-156)||(26778523-26778563)
chr8 (116-164)||(41859310-41859358)
chr8 (116-164)||(42345166-42345214)
chr8 (116-164)||(43925018-43925066)
chr8 (116-159)||(28090662-28090705)
chr8 (117-164)||(43924490-43924537)
chr8 (115-157)||(11676980-11677022)
chr8 (116-157)||(4364046-4364087)
chr8 (215-275)||(4943543-4943604)
chr8 (116-157)||(37639718-37639759)
chr8 (116-164)||(5034898-5034946)
chr8 (116-164)||(34992264-34992312)
chr8 (116-164)||(42346560-42346608)
chr8 (116-164)||(44835429-44835477)
[»] chr1 (21 HSPs)
chr1 (1-164)||(37874846-37875006)
chr1 (49-164)||(35616707-35616823)
chr1 (49-165)||(48870686-48870802)
chr1 (97-164)||(51987827-51987894)
chr1 (12-121)||(17494455-17494565)
chr1 (97-166)||(51988445-51988514)
chr1 (97-164)||(8560839-8560906)
chr1 (116-165)||(193849-193898)
chr1 (116-166)||(16270205-16270255)
chr1 (116-165)||(23440865-23440914)
chr1 (116-165)||(48971704-48971753)
chr1 (116-164)||(194701-194749)
chr1 (123-167)||(9947992-9948036)
chr1 (112-164)||(37874064-37874116)
chr1 (116-164)||(51974437-51974485)
chr1 (116-165)||(9948887-9948936)
chr1 (123-164)||(35615767-35615808)
chr1 (111-164)||(48869769-48869822)
chr1 (123-164)||(48972452-48972493)
chr1 (116-164)||(38930312-38930360)
chr1 (116-164)||(43737978-43738026)
[»] scaffold1037 (1 HSPs)
scaffold1037 (5-158)||(2788-2941)
[»] scaffold1031 (1 HSPs)
scaffold1031 (5-158)||(2907-3060)
[»] chr2 (22 HSPs)
chr2 (1-101)||(5277280-5277380)
chr2 (12-139)||(36475804-36475929)
chr2 (111-164)||(5276465-5276518)
chr2 (97-164)||(41042542-41042609)
chr2 (97-164)||(45139692-45139759)
chr2 (116-166)||(21471954-21472004)
chr2 (116-164)||(4478851-4478899)
chr2 (116-164)||(14573999-14574047)
chr2 (116-164)||(19521917-19521965)
chr2 (116-164)||(21471017-21471065)
chr2 (116-159)||(16649709-16649752)
chr2 (96-161)||(5278376-5278442)
chr2 (116-158)||(19521347-19521389)
chr2 (116-165)||(4479702-4479751)
chr2 (124-164)||(13134318-13134358)
chr2 (116-164)||(14573261-14573309)
chr2 (128-164)||(16650495-16650531)
chr2 (96-164)||(30545416-30545483)
chr2 (114-166)||(33433158-33433210)
chr2 (128-164)||(37157522-37157558)
chr2 (116-164)||(37547998-37548046)
chr2 (116-164)||(41985892-41985940)
[»] chr7 (14 HSPs)
chr7 (116-164)||(20896038-20896086)
chr7 (116-166)||(668177-668227)
chr7 (97-159)||(42455040-42455102)
chr7 (116-165)||(38779563-38779612)
chr7 (116-164)||(17145622-17145670)
chr7 (116-164)||(37468910-37468958)
chr7 (116-164)||(37469005-37469053)
chr7 (116-164)||(38778854-38778902)
chr7 (116-164)||(41194513-41194561)
chr7 (116-159)||(7677422-7677465)
chr7 (116-159)||(7677809-7677852)
chr7 (123-164)||(41195373-41195414)
chr7 (116-164)||(4261596-4261644)
chr7 (117-157)||(24322429-24322469)
[»] scaffold0311 (1 HSPs)
scaffold0311 (116-164)||(160-208)
[»] scaffold0041 (1 HSPs)
scaffold0041 (116-164)||(27221-27269)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 191 - 447
Target Start/End: Original strand, 54111792 - 54112048
Alignment:
Q  191 aacgtcaaccaattcaaatcaatgtttttaacacataatcacaaatgaattaaaatggaaaaatccaaatcaaatctctaataaccgctttagttcttta 290  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54111792 aacgtcaaccaattcaaatcaatgtttttaacacatcatcacaaatgaattaaaatggaaaaatccaaatcaaatctctaataaccgctttagttcttta 54111891  T
Q  291 ttttcggtattgattaatagcttctccctcatgattttgttcttcgccagcatctatcctaccttcaatgaaaatatgttaattttgttctttgccatca 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54111892 ttttcggtattgattaatagcttctccctcatgattttgttcttcgccagcatctatcttaccttcaatgaaaatatgttaattttgttctttgccatca 54111991  T
Q  391 aattatatttttggagaaatttcttcaattagtgaaaaaattctgcatcattgttat 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54111992 aattatatttttggagaaatttcttcaattagtgaaaaaattctgcatcattgttat 54112048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 17227881 - 17227996
Alignment:
Q  49 agaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcc 148  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  17227881 agaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttttcatggtgggaaagaagtctcctttcc 17227980  T
Q  149 caaattaaatgccacc 164  Q
    ||||||||||||||||    
T  17227981 caaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 54113636 - 54113698
Alignment:
Q  191 aacgtcaaccaattcaaatcaatgtttttaacacataatcacaaatgaattaaaatggaaaaa 253  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||    
T  54113636 aacgtcaaccaattaaaatcaatgtttttaatacatcatcacaaatgaattaaaatggaaaaa 54113698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 54112334 - 54112252
Alignment:
Q  194 gtcaaccaattcaaatcaatgtttttaacacataatcacaaatgaattaaaatggaaaaatccaaatcaaatctctaataacc 276  Q
    ||||||||||| |||||||| ||||| |||||| |  |||| | ||||||||| |||||||||||||||||||| ||||||||    
T  54112334 gtcaaccaattaaaatcaatatttttgacacatcagtacaagttaattaaaatagaaaaatccaaatcaaatctttaataacc 54112252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 19132812 - 19132862
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccct 166  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  19132812 actttcccatggtgggaaagaactttcctttcccaaattaaatggcaccct 19132862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 17227021 - 17226968
Alignment:
Q  111 aaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| ||||||||||||||| | ||||||||||||||||||||||||    
T  17227021 aaaagattttcccatggtgggaaagaaatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 37105058 - 37105118
Alignment:
Q  96 aatctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaa 157  Q
    ||||||||||| ||||||| |||||| |||||||||||| |||| || ||||||||||||||    
T  37105058 aatctaatggtttaaaaaa-actttcccatggtgggaaaaaagtctcgtttcccaaattaaa 37105118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 36750437 - 36750485
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  36750437 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 36750485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 43638078 - 43638126
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  43638078 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacc 43638126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 33454922 - 33454880
Alignment:
Q  108 taaaaaagactttctcatggtgggaaagaagtttcctttccca 150  Q
    ||||||| ||||||||||||||||||| || ||||||||||||    
T  33454922 taaaaaaaactttctcatggtgggaaacaattttcctttccca 33454880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 41584605 - 41584567
Alignment:
Q  112 aaagactttctcatggtgggaaagaagtttcctttccca 150  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  41584605 aaagactttcccatagtgggaaagaagtttcctttccca 41584567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 41755545 - 41755499
Alignment:
Q  118 tttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||||||||| || | ||||||||||||||||||| ||||    
T  41755545 tttctcatggtgggaaaaaactctcctttcccaaattaaatgacacc 41755499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 30847853 - 30847902
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||| |||| |||||| ||||||| ||||||||||||||||| |||||    
T  30847853 actttcccatgatgggaaggaagtttgctttcccaaattaaatggcaccc 30847902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 32489994 - 32489945
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||| |||||||| |||||| | ||||||||||||||||||| |||||    
T  32489994 actttcccatggtggaaaagaattctcctttcccaaattaaatggcaccc 32489945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 37104419 - 37104363
Alignment:
Q  96 aatctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaat 153  Q
    ||||||||||| ||||||| |||||| |||||||| ||| |||| |||||||||||||    
T  37104419 aatctaatggtttaaaaaa-actttcccatggtggaaaaaaagtctcctttcccaaat 37104363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 32490202 - 32490238
Alignment:
Q  123 catggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    ||||||||||||||| | |||||||||||||||||||    
T  32490202 catggtgggaaagaactctcctttcccaaattaaatg 32490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 9574456 - 9574619
Alignment:
Q  1 cataggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatct 100  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||| |    
T  9574456 cataggtgacgataataaacttagttgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaattt 9574555  T
Q  101 aatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||| |||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||    
T  9574556 aatggtaaaaaaaagactttcctatggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 5251356 - 5251450
Alignment:
Q  191 aacgtcaaccaattcaaatcaatgtttttaacacataatcacaaatgaattaaaatggaaaaatccaaatcaaatctctaataaccgctttagttc 286  Q
    |||||||||||||| |||| ||  ||||| |||||| | ||||| |||||||||||| |||||| ||||||||||||||||||||| |||| ||||    
T  5251356 aacgtcaaccaattaaaattaaaatttttgacacatcaacacaagtgaattaaaatg-aaaaatacaaatcaaatctctaataaccacttttgttc 5251450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 7531896 - 7531829
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||  |||||| |||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  7531896 atctaatggtcaaaaaaatactttcccatggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 7532421 - 7532488
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||  |||||| |||||| |||||||  |||||||| ||||||||||||||||||||||||    
T  7532421 atctaatggttaaaaaaatactttcccatggtgaaaaagaagtctcctttcccaaattaaatgccacc 7532488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 15083318 - 15083366
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  15083318 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 26227389 - 26227450
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaat 158  Q
    ||||||||||  |||||| |||||| |||||||| |||||||| || |||||||||||||||    
T  26227389 atctaatggtcaaaaaaatactttcccatggtggaaaagaagtctcatttcccaaattaaat 26227450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 7193386 - 7193338
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  7193386 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 7193338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 14337557 - 14337605
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  14337557 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 14337605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 33480628 - 33480676
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  33480628 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 22582479 - 22582522
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    |||||| ||||||||||||||| | |||||||||||||||||||    
T  22582479 actttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 22587310 - 22587353
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    |||||| ||||||||||||||| | |||||||||||||||||||    
T  22587310 actttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 5251628 - 5251547
Alignment:
Q  195 tcaaccaattcaaatcaatgtttttaacacataatcacaaatgaattaaaatggaaaaatccaaatcaaatctctaataaccg 277  Q
    |||| ||||| |||| ||| ||||| |||||| | ||||||||||||||||||| ||||| |||||||| |||  ||||||||    
T  5251628 tcaatcaattaaaattaatatttttgacacatcagcacaaatgaattaaaatgg-aaaatacaaatcaattcttcaataaccg 5251547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 3543063 - 3543112
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||| |||||||||||| || | ||||||||||||||||||| |||||    
T  3543063 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcaccc 3543112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 33018416 - 33018457
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaa 157  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  33018416 actttcccatggtgggaaagaactctcctttcccaaattaaa 33018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 7158483 - 7158435
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||| ||||||| ||||||||||||||||| ||||    
T  7158483 actttcccatgatgggaatgaagtttgctttcccaaattaaatggcacc 7158435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 7159341 - 7159389
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| ||||||| |||||| ||||||||||||||||| ||||    
T  7159341 actttcccatgatgggaaaaaagtttgctttcccaaattaaatggcacc 7159389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 22579983 - 22579935
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||| |||||| | ||||||||||||||||||| ||||    
T  22579983 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 22579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 24126020 - 24125972
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||||||| || |  |||||||||||||||||||||||    
T  24126020 actttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 55159343 - 55159180
Alignment:
Q  1 cataggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatct 100  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||    
T  55159343 cataggtgacgataataaacttaattgttaaggttagagatgatgtgaagaaattatagtgtggatagactataataataatggtggtactactcaatct 55159244  T
Q  101 aatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||    
T  55159243 aatggtaaaaaaaagactttcccatggtaggaaagaagtctcctttcccaaattaaataccacc 55159180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 47199305 - 47199443
Alignment:
Q  26 tgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctcat 125  Q
    |||||| |||||||||||||| |||||||||| || | |||| |||||||||| |||||||||||||||||||||||||||| ||||| |||||||  ||    
T  47199305 tgttaaggttagagatgatgtaaagaaaatattgtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaatgactttcctat 47199404  T
Q  126 ggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||| || |||||||||||||||||||||    
T  47199405 ggtgggaaagaagtctcttttcccaaattaaatgccacc 47199443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 28684142 - 28684280
Alignment:
Q  26 tgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctcat 125  Q
    |||||| |||||||||||||||||||||||||||| | | || |||||||||| |||||||||||||||||||||||||||| |||||| ||||||  ||    
T  28684142 tgttaaggttagagatgatgtgaagaaaatatagtgtggctagactataataacaatggtggtactactcaatctaatggtaaaaaaaaaactttcctat 28684241  T
Q  126 ggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||| ||||| |||| ||||||||||||||||||| ||||    
T  28684242 ggtaggaaaaaagtctcctttcccaaattaaatgtcacc 28684280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 43738362 - 43738521
Alignment:
Q  5 ggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatg 104  Q
    |||||| |||||||||| ||||||||| |||| |||| ||||||| |||||| ||| | |||| |||||| |||||||||||||||||||||||||||||    
T  43738362 ggtgacgataataaactaagttgttaaggttaaagattatgtgaaaaaaatagagtgtggatagactatagtaataatggtggtactactcaatctaatg 43738461  T
Q  105 gtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||  | ||||||||||| |||||||| |||||||| || |||| ||  ||||||| ||||    
T  43738462 gttaagaaaagactttcccatggtggaaaagaagtatcatttctcaggttaaatggcacc 43738521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 25371523 - 25371593
Alignment:
Q  94 tcaatctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  25371523 tcaatctaatggtcaaaaaaatactttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 37275155 - 37275095
Alignment:
Q  96 aatctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaa 157  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  37275155 aatctaatggtttaaaaaa-actttctcatggtgggaaagaagtctcctttcccaaattaaa 37275095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 47524092 - 47524218
Alignment:
Q  12 ataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaa 111  Q
    |||||||| | ||||||||| ||| ||||| ||||||| |||||||||| | ||||  ||||||||| ||||||||||||||||||||||| |||  |||    
T  47524092 ataataaaatgagttgttaaggttggagataatgtgaa-aaaatatagtgtggataggctataataacaatggtggtactactcaatctaagggttaaaa 47524190  T
Q  112 aaagactttctcatggtgggaaagaagt 139  Q
    |||   |||| |||||||| ||| ||||    
T  47524191 aaaagttttcccatggtggaaaaaaagt 47524218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 3847953 - 3847887
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccac 163  Q
    ||||||||||  |||||| |||||| |||||||||||| |||| |||||||||||||||||||||||    
T  3847953 atctaatggtcaaaaaaatactttcccatggtgggaaaaaagtctcctttcccaaattaaatgccac 3847887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 47198658 - 47198605
Alignment:
Q  111 aaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  47198658 aaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacc 47198605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 3848571 - 3848621
Alignment:
Q  109 aaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||||||    
T  3848571 aaaaaatactttcccatggtgggaaagaagtctcctttcccaaattaaatg 3848621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 38694954 - 38695002
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  38694954 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 55160062 - 55160114
Alignment:
Q  111 aaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||    
T  55160062 aaaagactttcccatggtgagaaa-aagtctcctttcccaaattaaatgccacc 55160114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 11417735 - 11417687
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  11417735 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 11417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 11417937 - 11417985
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  11417937 actttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 21165495 - 21165447
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||||||||||| | | ||||||||||||||||| ||||    
T  21165495 actttctcatggtgggaaagaactattctttcccaaattaaatggcacc 21165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 29651332 - 29651380
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  29651332 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 29651380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 30478357 - 30478309
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  30478357 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 30478309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 36865717 - 36865765
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  36865717 actttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 48013365 - 48013317
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  48013365 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 48013317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 36864865 - 36864823
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaat 158  Q
    |||||||||||||| ||||||| | ||||||||||||||||||    
T  36864865 actttctcatggtgagaaagaactctcctttcccaaattaaat 36864823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 10424163 - 10424118
Alignment:
Q  124 atggtgggaaagaagtttcctttcccaaattaaatgccaccctcag 169  Q
    |||||||||||||| | ||||||||||||||||||| |||| ||||    
T  10424163 atggtgggaaagaactctcctttcccaaattaaatggcaccatcag 10424118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 39523271 - 39523320
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||| |||||||| |||||| | ||||||||||||||||||| |||||    
T  39523271 actttcccatggtggaaaagaactctcctttcccaaattaaatggcaccc 39523320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 53600225 - 53600184
Alignment:
Q  118 tttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    ||||||||| |||||||||||||| ||||||||| |||||||    
T  53600225 tttctcatgatgggaaagaagtttgctttcccaagttaaatg 53600184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 6246832 - 6246784
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||||||| || || |||||||||||||||| ||||||    
T  6246832 actttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 10425059 - 10425107
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | |||||||| |||||||||| ||||    
T  10425059 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 10425107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 26611283 - 26611331
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||||||| || | ||||||||||||||||||| ||||    
T  26611283 actttcccatggtgggaaaaaactctcctttcccaaattaaatgacacc 26611331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 28683544 - 28683508
Alignment:
Q  128 tgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  28683544 tgggaaagaagtctccttccccaaattaaatgccacc 28683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 31836460 - 31836508
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||| ||||||||||| ||||    
T  31836460 actttcccatggtgggaaagaactctcctttctcaaattaaatggcacc 31836508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 45235960 - 45236008
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | |||||| |||||||||||| ||||    
T  45235960 actttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 13655071 - 13654933
Alignment:
Q  26 tgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctcat 125  Q
    |||||| |||||||||||||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||    
T  13655071 tgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttcctat 13654972  T
Q  126 ggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  13654971 ggtgggaaagaagtctcctttcccaaattaaatgtcacc 13654933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 26688214 - 26688159
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccctcagac 171  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| |||||| ||||    
T  26688214 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacccttagac 26688159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 26957945 - 26957890
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccctcagac 171  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| |||||| ||||    
T  26957945 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacccttagac 26957890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 39167422 - 39167484
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgc 160  Q
    ||||||||||| |||||| | |||| |||| |||||||||||| ||||||||||||||||||||    
T  39167422 atctaatggta-aaaaaatattttcccatgatgggaaagaagtctcctttcccaaattaaatgc 39167484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 13655655 - 13655708
Alignment:
Q  111 aaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||| |||  |||||||||||| || |||||||||||||||||||||    
T  13655655 aaaagactttcccataatgggaaagaagtctcttttcccaaattaaatgccacc 13655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 7625521 - 7625473
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  7625521 actttcccatgatgggaaagaagtttgctttcccaaattaaatgacacc 7625473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 8040444 - 8040492
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| || |||||||||||| ||||||||||||||||||||| ||||    
T  8040444 actttcccacggtgggaaagaaatttcctttcccaaattaaatggcacc 8040492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 8204168 - 8204120
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  8204168 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 8204120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 15184017 - 15184065
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  15184017 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 33002816 - 33002864
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  33002816 actttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 33002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 26316969 - 26316934
Alignment:
Q  115 gactttctcatggtgggaaagaagtttcctttccca 150  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26316969 gactttcccatggtgggaaagaagtttcctttccca 26316934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 39950451 - 39950404
Alignment:
Q  117 ctttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  39950451 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 2319313 - 2319264
Alignment:
Q  117 ctttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccct 166  Q
    ||||| |||||||||||| || |  |||||||||||||||||||||||||    
T  2319313 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccaccct 2319264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 4607116 - 4607184
Alignment:
Q  96 aatctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||  |||||| ||||||||||||||||||| || | ||| ||||||   |||||||||||    
T  4607116 aatctaatggttgaaaaaaaactttctcatggtgggaaacaactctccattcccatgctaaatgccacc 4607184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 4607518 - 4607470
Alignment:
Q  110 aaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaat 158  Q
    ||||| |||||| |||||||||||| |||| | ||||||||||||||||    
T  4607518 aaaaaaactttcccatggtgggaaaaaagtctactttcccaaattaaat 4607470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 7626023 - 7626071
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| |||| |||||||||||| ||||    
T  7626023 actttcccatgatgggaaagaagtttgcttttccaaattaaatgacacc 7626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 13404703 - 13404751
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||||||| |||  ||| ||||||||||||||||||||    
T  13404703 actttcccatggtgggaaaaaagagtccgttcccaaattaaatgccacc 13404751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 14553715 - 14553667
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| ||| |||||||||| ||||||||||||||||| ||||    
T  14553715 actttcccatgatggaaaagaagtttgctttcccaaattaaatggcacc 14553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 26688741 - 26688789
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| |||| |||||||||||| ||||    
T  26688741 actttcccatgatgggaaagaagtttgcttttccaaattaaatgtcacc 26688789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 26958472 - 26958520
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| |||| |||||||||||| ||||    
T  26958472 actttcccatgatgggaaagaagtttgcttttccaaattaaatgtcacc 26958520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 33001973 - 33001937
Alignment:
Q  123 catggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    ||||||||||||||| | |||||||||||||||||||    
T  33001973 catggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 36626630 - 36626678
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | || |||||||||||||||| ||||    
T  36626630 actttcccatggtgggaaagaactctcatttcccaaattaaatggcacc 36626678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 44752478 - 44752620
Alignment:
Q  24 gttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctc 123  Q
    |||||||| |||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||| |||||||| |||||||| ||||      
T  44752478 gttgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatttaatggtaaaaaaaagattttcct 44752577  T
Q  124 atggtgggaaagaagtttcctttcccaaattaaatgccaccct 166  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  44752578 atggtgggaaagaagtctcctttcccaagttaaatgccaccct 44752620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 39254929 - 39254786
Alignment:
Q  24 gttgttaaagttagagatgatgtgaagaaaatatagtata--gatatactataataataatggtggtactactcaatctaatggtataaaaaagactttc 121  Q
    |||||||| |||||||||||||||||||||||||||| |   |||| |||||||||| |||| |||||||||||||||||||| || |||||||||||||    
T  39254929 gttgttaaggttagagatgatgtgaagaaaatatagtgtgtggatagactataataacaatgatggtactactcaatctaatgataaaaaaaagactttc 39254830  T
Q  122 tcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
      |||||||||||||||| |||||||||||||||||||||||||    
T  39254829 ctatggtgggaaagaagtctcctttcccaaattaaatgccaccc 39254786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 62150 - 62289
Alignment:
Q  26 tgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctcat 125  Q
    |||||| |||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||||||| || ||||| |||||||  ||    
T  62150 tgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatgataaaaaaatgactttcctat 62249  T
Q  126 ggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||||||||||| ||||||| ||||||||||| |||||    
T  62250 ggtgggaaagaagtctcctttctcaaattaaatgtcaccc 62289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 216552 - 216392
Alignment:
Q  5 ggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatg 104  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||| |||||| ||| | |||| |||||| ||| |||||||||||||||||||||||||    
T  216552 ggtgacgataataaactaagttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatg 216453  T
Q  105 gtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    ||  ||||||||||||  ||| ||||||||||||| | |||||||| |||||||| |||||    
T  216452 gttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggcaccc 216392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 693112 - 692952
Alignment:
Q  5 ggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatg 104  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||| |||||| ||| | |||| |||||| ||| |||||||||||||||||||||||||    
T  693112 ggtgacgataataaactaagttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatg 693013  T
Q  105 gtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    ||  ||||||||||||  ||| ||||||||||||| | |||||||| |||||||| |||||    
T  693012 gttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggcaccc 692952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 697321 - 697161
Alignment:
Q  5 ggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatg 104  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||| |||||| ||| | |||| |||||| ||| |||||||||||||||||||||||||    
T  697321 ggtgacgataataaactaagttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatg 697222  T
Q  105 gtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    ||  ||||||||||||  ||| ||||||||||||| | |||||||| |||||||| |||||    
T  697221 gttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggcaccc 697161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 730175 - 730015
Alignment:
Q  5 ggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatg 104  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||| |||||| ||| | |||| |||||| ||| |||||||||||||||||||||||||    
T  730175 ggtgacgataataaactaagttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatg 730076  T
Q  105 gtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    ||  ||||||||||||  ||| ||||||||||||| | |||||||| |||||||| |||||    
T  730075 gttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggcaccc 730015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 854070 - 853910
Alignment:
Q  5 ggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatg 104  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||| |||||| ||| | |||| |||||| ||| |||||||||||||||||||||||||    
T  854070 ggtgacgataataaactaagttgttaaggttagagatgatgtgaaaaaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatg 853971  T
Q  105 gtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    ||  ||||||||||||  ||| ||||||||||||| | |||||||| |||||||| |||||    
T  853970 gttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggcaccc 853910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 1366523 - 1366649
Alignment:
Q  26 tgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctcat 125  Q
    |||||| |||||||||||||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||||   ||    
T  1366523 tgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaatgacttttctat 1366622  T
Q  126 ggtgggaaagaagtttcctttcccaaa 152  Q
    ||||| |||||||| ||||||||||||    
T  1366623 ggtggaaaagaagtctcctttcccaaa 1366649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 12351203 - 12351068
Alignment:
Q  24 gttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctc 123  Q
    ||||||||  ||||| ||||||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||        
T  12351203 gttgttaagtttagaaatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactt---- 12351108  T
Q  124 atggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
     | |||| |||||||||||||||||||| |||||| |||||    
T  12351107 -ttgtggaaaagaagtttcctttcccaagttaaataccacc 12351068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 61507 - 61454
Alignment:
Q  111 aaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  61507 aaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 61454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 1365882 - 1365829
Alignment:
Q  111 aaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  1365882 aaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 44751664 - 44751608
Alignment:
Q  108 taaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||    
T  44751664 taaaaaagactttcccatgatgggaaagaagtctcctttcccaagttaaatgccacc 44751608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 39255748 - 39255800
Alignment:
Q  112 aaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||| ||||||||||||||||| || |||||||| ||||||||||||    
T  39255748 aaagactttcccatggtgggaaagaagtctcatttcccaagttaaatgccacc 39255800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 26778523 - 26778563
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaa 156  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  26778523 actttctcatgatgggaaagaagtttgctttcccaaattaa 26778563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 41859358 - 41859310
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  41859358 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41859310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 42345214 - 42345166
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  42345214 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacc 42345166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 43925018 - 43925066
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||||||||||| || || |||||||||||||||| ||||||    
T  43925018 actttctcatggtgggaaacaacttccctttcccaaattaaacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 28090705 - 28090662
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    |||||| |||| |||||||||||||| |||||||||||||||||    
T  28090705 actttcccatgatgggaaagaagtttactttcccaaattaaatg 28090662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 43924537 - 43924490
Alignment:
Q  117 ctttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||| |||||||||||| || || |||||||||||||||||||||||    
T  43924537 ctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 11677022 - 11676980
Alignment:
Q  115 gactttctcatggtgggaaagaagtttcctttcccaaattaaa 157  Q
    |||||| |||||||||||||||| || ||||||||||||||||    
T  11677022 gactttttcatggtgggaaagaacttccctttcccaaattaaa 11676980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 4364087 - 4364046
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaa 157  Q
    |||||| |||| ||||||| ||||||||||||||||||||||    
T  4364087 actttcccatgatgggaaaaaagtttcctttcccaaattaaa 4364046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 4943604 - 4943543
Alignment:
Q  215 tttttaacacataatcacaaatgaattaaaa-tggaaaaatccaaatcaaatctctaataac 275  Q
    ||||| ||||||||  |||| |||||||||| ||||| |||||||||||||||| |||||||    
T  4943604 tttttgacacataagaacaagtgaattaaaaatggaagaatccaaatcaaatctttaataac 4943543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 37639759 - 37639718
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaa 157  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  37639759 actttcccatggtgggaaagaactctcctttcccaaattaaa 37639718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 5034946 - 5034898
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||| |||||| | ||||||||||||||||||| ||||    
T  5034946 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 5034898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 34992264 - 34992312
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||||||| || | ||||||||||||||||||| ||||    
T  34992264 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 34992312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 42346560 - 42346608
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| ||| |||||||||| ||||||||||||||||| ||||    
T  42346560 actttcccatgatggaaaagaagtttgctttcccaaattaaatggcacc 42346608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 44835429 - 44835477
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| |||| |||||||||||| ||||    
T  44835429 actttcccatgatgggaaagaagtttgcttttccaaattaaatggcacc 44835477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 37874846 - 37875006
Alignment:
Q  1 cataggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatct 100  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||| |||| |||||||| |||||||    
T  37874846 cataggtgacgataataaacttagttgttaaggttagagatgatgtgaagaaaatatagtgtggatagactataataacaatgatggtactaatcaatct 37874945  T
Q  101 aatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||| | |||||||||||| |||||  |||||||   | ||||||||| ||||||||||||    
T  37874946 aatggtaaataaaagactttcttatggtaagaaagaa---ttctttcccaagttaaatgccacc 37875006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 35616707 - 35616823
Alignment:
Q  49 agaaaatatagtatagatatactataataataatggtggtactactcaatctaatggt-ataaaaaagactttctcatggtgggaaagaagtttcctttc 147  Q
    |||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||    
T  35616707 agaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaaagactttcccatggtgggaaagaagtctcctttc 35616806  T
Q  148 ccaaattaaatgccacc 164  Q
    |||| ||||||||||||    
T  35616807 ccaagttaaatgccacc 35616823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 48870686 - 48870802
Alignment:
Q  49 agaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcc 148  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| || |||||    
T  48870686 agaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttcccatggtgggaaaaaagtctcatttcc 48870785  T
Q  149 caaattaaatgccaccc 165  Q
    ||| |||||| ||||||    
T  48870786 caagttaaattccaccc 48870802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 51987894 - 51987827
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||  |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  51987894 atctaatggttaaaaaaatactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 51987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 17494565 - 17494455
Alignment:
Q  12 ataataaacttagttgttaaagttagagatgatgtgaagaaa-atatagtatagatatactataataataatggtggtactactcaatctaatggtataa 110  Q
    |||||||||| ||||| ||| || ||| |||||||||| ||  ||||||| | |||| |||||||||| ||||||||||||| |||||||||||||  ||    
T  17494565 ataataaactgagttgataaggtcagatatgatgtgaaaaattatatagtgtggatagactataataacaatggtggtactattcaatctaatggttgaa 17494466  T
Q  111 aaaagactttc 121  Q
    |||||||||||    
T  17494465 aaaagactttc 17494455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 51988445 - 51988514
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccct 166  Q
    ||||||||||  |||||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  51988445 atctaatggtcaaaaaaatactttcccatggtggaaaagaagtctcctttcccaaattaaatgccaccct 51988514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 8560906 - 8560839
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||  |||||| |||||| |||| |||||||||||| ||||||||||||||||||| ||||    
T  8560906 atctaatggtcaaaaaaatactttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 193898 - 193849
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  193898 actttctcatggtgggaaagaactctcctttcccaaattaaatggcaccc 193849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 16270255 - 16270205
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccct 166  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||||    
T  16270255 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccct 16270205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 23440865 - 23440914
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| |||||    
T  23440865 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccc 23440914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 48971753 - 48971704
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||||||| ||||||||||| | ||||||||||||||||||| |||||    
T  48971753 actttctcattgtgggaaagaactctcctttcccaaattaaatgacaccc 48971704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 194701 - 194749
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  194701 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 194749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 9948036 - 9947992
Alignment:
Q  123 catggtgggaaagaagtttcctttcccaaattaaatgccaccctc 167  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||    
T  9948036 catggtgggaaagaacttttctttcccaaattaaatggcaccctc 9947992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 37874116 - 37874064
Alignment:
Q  112 aaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||| ||||||||||||||||| || |||||||| ||||||| ||||    
T  37874116 aaagactttcccatggtgggaaagaagtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 51974485 - 51974437
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  51974485 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 51974437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 9948887 - 9948936
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||| ||||||||||||||| | |||||||| |||||||||| |||||    
T  9948887 actttcccatggtgggaaagaactctcctttcctaaattaaatggcaccc 9948936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 35615808 - 35615767
Alignment:
Q  123 catggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||||||||| |||||| |||| ||||||||||||    
T  35615808 catggtgggaaagaagtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 48869822 - 48869769
Alignment:
Q  111 aaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||| |||||||| ||||||||||| ||||||| ||||    
T  48869822 aaaagattttcccatggtggaaaagaagtctcctttcccaagttaaatgtcacc 48869769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 48972452 - 48972493
Alignment:
Q  123 catggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  48972452 catggtgggaaagaactctcctttcccaaattaaatggcacc 48972493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 38930360 - 38930312
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||  |||||| ||||||||||||||||||||| ||||    
T  38930360 actttcccatggtgaaaaagaactttcctttcccaaattaaatgacacc 38930312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 43737978 - 43738026
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||| | ||||||||||||||||||| ||||    
T  43737978 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 43738026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 2788 - 2941
Alignment:
Q  5 ggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatg 104  Q
    |||||| |||||||||| ||||||||| ||||||||||||| ||| |||||| ||| | |||| |||||||||| |||||||||||||||||||||||||    
T  2788 ggtgacgataataaactaagttgttaaggttagagatgatgcgaaaaaaatagagtgtggatagactataataacaatggtggtactactcaatctaatg 2887  T
Q  105 gtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaat 158  Q
    |   ||||||||||||| |||||| | |||||||| |||||||||| |||||||    
T  2888 gataaaaaaagactttcccatggtagaaaagaagtatcctttcccagattaaat 2941  T

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Target: scaffold1031 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 2907 - 3060
Alignment:
Q  5 ggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatg 104  Q
    |||||| |||||||||| ||||||||| ||||||||||||| ||| |||||| ||| | |||| |||||||||| |||||||||||||||||||||||||    
T  2907 ggtgacgataataaactaagttgttaaggttagagatgatgcgaaaaaaatagagtgtggatagactataataacaatggtggtactactcaatctaatg 3006  T
Q  105 gtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaat 158  Q
    |   ||||||||||||| |||||| | |||||||| |||||||||| |||||||    
T  3007 gataaaaaaagactttcccatggtagaaaagaagtatcctttcccagattaaat 3060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5277280 - 5277380
Alignment:
Q  1 cataggtgacaataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatct 100  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||||    
T  5277280 cataggtgacgataataaacttagttgttaaggttggagatgatgtgaagaaaatatagtgtggatagactataataacaatggtggtactacttaatct 5277379  T
Q  101 a 101  Q
    |    
T  5277380 a 5277380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 36475929 - 36475804
Alignment:
Q  12 ataataaacttagttgttaaagttagagatgatgtgaagaaaatatagtatagatatactataataataatggtggtactactcaatctaatggtataaa 111  Q
    |||||||| | ||||||||| ||| |||||||||||||  ||||||||| | |||| |||||||||| ||||||||||||||||||||||| |||  |||    
T  36475929 ataataaaatgagttgttaaggttggagatgatgtgaa--aaatatagtgtggatagactataataacaatggtggtactactcaatctaagggttaaaa 36475832  T
Q  112 aaagactttctcatggtgggaaagaagt 139  Q
    |||| ||||| |||||||||||| ||||    
T  36475831 aaaggctttcccatggtgggaaaaaagt 36475804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 5276518 - 5276465
Alignment:
Q  111 aaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  5276518 aaaagactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacc 5276465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 41042609 - 41042542
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||  |||||| | |||| ||||||||||||||||  ||||||| ||||||||||||||||    
T  41042609 atctaatggtcaaaaaaatattttcccatggtgggaaagaagcctcctttctcaaattaaatgccacc 41042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 45139759 - 45139692
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||  |||||| | |||| |||| ||| |||||||| ||||||||||||||||||||||||    
T  45139759 atctaatggtcaaaaaaatattttcccatgatggaaaagaagtctcctttcccaaattaaatgccacc 45139692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 21471954 - 21472004
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccct 166  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||||    
T  21471954 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccct 21472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 4478899 - 4478851
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  4478899 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 4478851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 14573999 - 14574047
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||| |||||||||||||| | ||||||||||||||||||| ||||    
T  14573999 actttcttatggtgggaaagaactctcctttcccaaattaaatggcacc 14574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 19521917 - 19521965
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| ||||    
T  19521917 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 19521965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 21471065 - 21471017
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  21471065 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 16649752 - 16649709
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    |||||| |||| |||||||||||||| |||||||||||||||||    
T  16649752 actttcccatgatgggaaagaagtttactttcccaaattaaatg 16649709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 5278376 - 5278442
Alignment:
Q  96 aatctaatggtataaaaaagactttctcatggtggg-aaagaagtttcctttcccaaattaaatgcc 161  Q
    |||||||||||| |||||||| ||||  |||||||| |||||||| || |||||||| |||||||||    
T  5278376 aatctaatggtaaaaaaaagattttcctatggtgggaaaagaagtctcttttcccaagttaaatgcc 5278442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 19521389 - 19521347
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaat 158  Q
    |||||| |||| |||||||||||||| ||||||||||||||||    
T  19521389 actttcccatgatgggaaagaagtttgctttcccaaattaaat 19521347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 4479702 - 4479751
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||| ||||||| ||||||| | ||||||||||||||||||| |||||    
T  4479702 actttcccatggtgagaaagaactctcctttcccaaattaaatggcaccc 4479751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 13134358 - 13134318
Alignment:
Q  124 atggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  13134358 atggtgggaaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 14573309 - 14573261
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||||||||||| || | ||||||||||||||||||| ||||    
T  14573309 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 16650495 - 16650531
Alignment:
Q  128 tgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  16650495 tgggaaagaagtttgctttcccaaattaaatggcacc 16650531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 30545416 - 30545483
Alignment:
Q  96 aatctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||| ||||||| |||||| |||  ||||||| || || |||||||||||||||||| ||||    
T  30545416 aatctaatggt-taaaaaaaactttcccatcatgggaaacaacttccctttcccaaattaaatggcacc 30545483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 33433158 - 33433210
Alignment:
Q  114 agactttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccct 166  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||| | ||||||    
T  33433158 agactttcccatggtgggaaagaactctcctttctcaaattaaacggcaccct 33433210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 37157558 - 37157522
Alignment:
Q  128 tgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  37157558 tgggaaagaagtttgctttcccaaattaaatggcacc 37157522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 37548046 - 37547998
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||| | ||||||||||||||||||| ||||    
T  37548046 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 37547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 41985892 - 41985940
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||||||| ||| || || |||||||||||||||| ||||||    
T  41985892 actttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 20896038 - 20896086
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  20896038 actttctcatgatgggaaaaaagtttcctttcccaaattaaacgccacc 20896086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 668227 - 668177
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccct 166  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||||    
T  668227 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccct 668177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 42455102 - 42455040
Alignment:
Q  97 atctaatggtataaaaaagactttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    ||||||||||  |||||| |||||| |||||| | |||||||| |||||||||||||||||||    
T  42455102 atctaatggtcaaaaaaatactttcccatggtagaaaagaagtctcctttcccaaattaaatg 42455040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 38779563 - 38779612
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccaccc 165  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| |||||    
T  38779563 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccc 38779612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 17145670 - 17145622
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  17145670 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 37468958 - 37468910
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  37468958 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37468910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 37469005 - 37469053
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  37469005 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 38778902 - 38778854
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  38778902 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38778854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 41194561 - 41194513
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  41194561 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41194513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 7677465 - 7677422
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    ||||| |||||||||||||||| | |||||||||||||||||||    
T  7677465 actttttcatggtgggaaagaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 7677809 - 7677852
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatg 159  Q
    |||||| ||||||||||||||| | |||||||||||||||||||    
T  7677809 actttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 41195373 - 41195414
Alignment:
Q  123 catggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||| |||||||||||||| ||||||||||||||||| ||||    
T  41195373 catgatgggaaagaagtttgctttcccaaattaaatggcacc 41195414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 4261596 - 4261644
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | |||||||| |||||||||| ||||    
T  4261596 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 4261644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 24322469 - 24322429
Alignment:
Q  117 ctttctcatggtgggaaagaagtttcctttcccaaattaaa 157  Q
    ||||| |||| ||||||| ||||||||||||||||||||||    
T  24322469 ctttcccatgatgggaaaaaagtttcctttcccaaattaaa 24322429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 160 - 208
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  160 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 27269 - 27221
Alignment:
Q  116 actttctcatggtgggaaagaagtttcctttcccaaattaaatgccacc 164  Q
    |||||| |||| |||||||||| | ||||||||||||||||||| ||||    
T  27269 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

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