View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_18 (Length: 434)
Name: NF3813_high_18
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 39790972 - 39791373
Alignment:
| Q |
16 |
ataatcacagtcaatttaaaatgcaacataggcacttccttctctctcatattatcaacttaacaaagtttgaattgaaattcgcattcaagatgataac |
115 |
Q |
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| T |
39790972 |
ataatcagagtcaatttaaaatgca---tagacacttccttctc----atattatcaacttaacaaagtttgaattgaaattcgcattcaagatgataac |
39791064 |
T |
|
| Q |
116 |
gacgatttcattcttggcaaacataatggcttttcccactttgttttgttaaacaaggggaagcctgtggtgcgcttgaagtattgcaatgggtcatggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39791065 |
gacgatttcattcttggcaaacataatggcttttcccactttgttttgttaaacaaggggaagcctgtggtgtgcttgaagtattgcaatgggtcatggt |
39791164 |
T |
|
| Q |
216 |
catatagaacatgttgattttgagatggattcaaagattgtggtggaaaagttccatagtcacaaggaagattttttcaagctaggtgctattttatttg |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39791165 |
catatagaacatgttgattttcagatggattcaaagattgtggtggaaaagttccatagtcacaaggaagatttttccaagctaggtgctattttattta |
39791264 |
T |
|
| Q |
316 |
attgtaaagctcttttttacttattttcacaacttatgtaaagttcattagaagacaagtcaatgagacaattcttgttcttattaaagtaaccatattt |
415 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
39791265 |
attgtaaagctcttttttacttatttttacaacttatgtaaagttcattagaagacaagtcaatgagacaattcttgtttttattagagtaatcatattt |
39791364 |
T |
|
| Q |
416 |
tttgttcat |
424 |
Q |
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||||||||| |
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| T |
39791365 |
tttgttcat |
39791373 |
T |
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