View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_20 (Length: 427)
Name: NF3813_high_20
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 43962439 - 43962666
Alignment:
| Q |
19 |
tcgacataaggacgattgaacccttctaatgtatgcatctgctgcatgaatggagtatactttttcttgtcgagaaaaggaatattcctcctgtactagt |
118 |
Q |
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| T |
43962439 |
tcgacataaggacgattgaacccttctaatgtatgcatctgctgcatgaatggagtatactttttcttgtcgagaaaaggaatattcctcctgtactagt |
43962538 |
T |
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| Q |
119 |
acttaactccgctttccttgttcaaccggaaaatacacataacttcattatcattcaaattccacattctatgttctgtcttctgaatagttgcaggaat |
218 |
Q |
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| T |
43962539 |
acttaactccgctttccttgttcaaccggaaaatacacataacttcattatcattcaaattccacattctatgttctgtcttctgaatagttgcaggaat |
43962638 |
T |
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| Q |
219 |
ttatctattctcaacatgttgtctatgc |
246 |
Q |
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| T |
43962639 |
ttatctattctcaacatgttgtctatgc |
43962666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 271 - 408
Target Start/End: Original strand, 43962690 - 43962827
Alignment:
| Q |
271 |
gggttaaatttttatcacgcattgtgaatctgacggaatgattttgggcaatccttatgatggaccggcttcctcatgttcctcgaacctcctaaggcct |
370 |
Q |
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| T |
43962690 |
gggttaaatttttatcacgcattgtgaatctgacggaatgatttttggcaatccttatgatggaccggcttcatcatgttcctcgaacctcctaaggcct |
43962789 |
T |
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| Q |
371 |
tagcaaaacaattgtttaaagaagctgaataataatat |
408 |
Q |
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| T |
43962790 |
tagcaaaacaattgtttaaagaagctgaataataatat |
43962827 |
T |
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