View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3813_high_22 (Length: 398)
Name: NF3813_high_22
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 187 - 385
Target Start/End: Original strand, 38207601 - 38207799
Alignment:
| Q |
187 |
gcaagagaatgtaccttaaggtttattgttgaagaatgaatatgaatgaaattagggtttagaaaaatgtagtggagttgcaatttatagaatgaaatga |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38207601 |
gcaagagaatgtaccttaaggtttattgttgaagaatgaatatgaatgaaattagggtttagaaaaatgtagtggagtagcaatttatagaatgaaatga |
38207700 |
T |
|
| Q |
287 |
agtgtaaaggaaaaagagtggaagacgaaagagggaaagttttaagagtgtttttagcacactcagactcagtctcacgccaaaaacgtactgtctctg |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207701 |
agtgtaaaggaaaaagagtggaagacgaaagagggaaagttttaagagtgtttttagcacactcagactcagtctcacgccaaaaacgtactgtctctg |
38207799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 38207415 - 38207534
Alignment:
| Q |
1 |
agcagcataatgcaaaaagaggcatgttactactgttaatctgttgtaataacgttgattttgataaagcaagaatgaaggagtgaaattgaaagcgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207415 |
agcagcataatgcaaaaagaggcatgttactactgttaatctgttgtaataacgttgattttgataaagcaagaatgaaggagtgaaattgaaagcgaga |
38207514 |
T |
|
| Q |
101 |
gaataaagcgagtgttagtg |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38207515 |
gaataaagcgagtgttagtg |
38207534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University