View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_24 (Length: 387)
Name: NF3813_high_24
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 38207105 - 38206754
Alignment:
| Q |
19 |
gtgtattatagcctactagacacttcttatagaaggtgtgtccgacacgacatacatgtgattacattcannnnnnnnnnnnnnnnnnnnncaaatattt |
118 |
Q |
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| T |
38207105 |
gtgtatta-agcctactagacacttcttatagaaggtgtgtccgacacgacatacatgtgattacattcaattaattttattttattttttcaaatattt |
38207007 |
T |
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| Q |
119 |
accgatgtcgaagtgtcagtgtcatgtccagagtgtctgtgtttttgttagtgcttcataatttttggctgatatattgtttatggtttgatgttcaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207006 |
accgatgtcgaagtgtcagtgtcatgtccagaatgtctgtgtttttgttagtgcttcataatttttggctgatatattgtttatggtttgatgttcaaga |
38206907 |
T |
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| Q |
219 |
atacgctggaaatgttctgagctttctcatggcaacaaaagaacgtcctgtggctgcgccgaaaaaaccagcccttacaccgaaggctataatacaccaa |
318 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38206906 |
atacgctggaaatattctgagctttctcatggcaacaaaagaacgtcctgtggctgcgccgaaaaaaccagcccttacaccgaaggctataatacaccaa |
38206807 |
T |
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| Q |
319 |
aagtttggcaaaaatgcttactatgtggtagaggaagtgaaagaggtctgtca |
371 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38206806 |
aagtttggcaaaaatgcttgctatgtggtagaggaagtgaaagaggtctgtca |
38206754 |
T |
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