View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_25 (Length: 378)
Name: NF3813_high_25
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 5860815 - 5860477
Alignment:
| Q |
19 |
gactcgatactagaaacaaagaggactgtgagtttctacttttaagagacgtcatagatctccagtagagttttgagtgaactttaattactggtctaaa |
118 |
Q |
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| T |
5860815 |
gactcgatactagaaacaaagaggactgtgagtttctacttttaagagacgtcatagatctccagtagagttttgagggaactttaatcactggtctaaa |
5860716 |
T |
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| Q |
119 |
gtgaaccacctatcaaagcagtctaccgtagaaaccgccnnnnnnnntaaactaaagttaaatttcttgaatttatctcttgatggtacgtacctttaca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5860715 |
gtgaaccacctatcaaagcagtctaccgtagaaaccgccaaaaaaa-taaactaaagttaaatttcttgaatttatctcttgatggtac----ctttaca |
5860621 |
T |
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| Q |
219 |
cattcgagaagttttggttcatcatgcaagtacttgatcacccatgtcatgacagtagctgtggtatcctgagcagcaaaaagcactccaataatgttat |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5860620 |
cattcgagaagttttggttgatcatgcaagtacttgatcacccatgtcatgacagtagctgtggtatcctgagcagcaaaaagcactccaataatgttat |
5860521 |
T |
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| Q |
319 |
ctccaatttcatcatcagataaaatttctcctccttctcctttc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5860520 |
ctccaatttcatcatcagataaaatttctcctccttctcctttc |
5860477 |
T |
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