View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_27 (Length: 357)
Name: NF3813_high_27
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 24 - 341
Target Start/End: Original strand, 11835183 - 11835500
Alignment:
| Q |
24 |
gacagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttggatataagca |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11835183 |
gacagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttgaatataagca |
11835282 |
T |
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| Q |
124 |
acttcattttttatatcaacattgattgttcttagattaaacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11835283 |
acttcattttttatatcaacattgattgttcttagattaaacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtc |
11835382 |
T |
|
| Q |
224 |
caccgcttcttattttgatttgaatgttgatttgcttagcacatattacagtggattggacatgcgaaggttgttttggagtgactatgagtaatggttt |
323 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11835383 |
caccgcttcttattttgatttgaatgttgacttgcttagcacatattacagtggattggacatgcgaaggttgttttggagtgactatgagtaatggttt |
11835482 |
T |
|
| Q |
324 |
tgttattgaagttgtgtt |
341 |
Q |
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|||||||||||||||||| |
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| T |
11835483 |
tgttattgaagttgtgtt |
11835500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 341
Target Start/End: Complemental strand, 11821181 - 11820864
Alignment:
| Q |
24 |
gacagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttggatataagca |
123 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||| || |||||||||||||||||||||||| |||| | |||||| |
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| T |
11821181 |
gacagttggacacacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccaccttgaacgtaagca |
11821082 |
T |
|
| Q |
124 |
acttcattttttatatcaacattgattgttcttagattaaacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtc |
223 |
Q |
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| T |
11821081 |
acttcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtc |
11820982 |
T |
|
| Q |
224 |
caccgcttcttattttgatttgaatgttgatttgcttagcacatattacagtggattggacatgcgaaggttgttttggagtgactatgagtaatggttt |
323 |
Q |
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|||| ||||| |||||||||||||| |||| |||||| |||||||| ||||||||||| ||||| || |||||||||||||| ||||||||||||||||| |
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| T |
11820981 |
caccacttctgattttgatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttggagttactatgagtaatggttt |
11820882 |
T |
|
| Q |
324 |
tgttattgaagttgtgtt |
341 |
Q |
| |
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||| ||||||||||||| |
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| T |
11820881 |
tgtcgttgaagttgtgtt |
11820864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 11917502 - 11917454
Alignment:
| Q |
60 |
tttactcttttcagaaattctgtagtaaacttcaccaagtgtagcacca |
108 |
Q |
| |
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|||||| || |||| |||||| |||||||||||||||||||| |||||| |
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| T |
11917502 |
tttacttttctcagcaattctatagtaaacttcaccaagtgttgcacca |
11917454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 248
Target Start/End: Complemental strand, 38125480 - 38125272
Alignment:
| Q |
40 |
ccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttggatataagcaacttcattttttatat |
139 |
Q |
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||||||||||| ||||||||||||||||| || | || || || ||||| ||||||||| ||||||||| || | |||||| ||||||| ||| | |
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| T |
38125480 |
ccagcaggaaagccatgaactttactcttctcccatatcctataataaacctcaccaagtatagcaccagactgaaccacagcaacctcattttgtatgt |
38125381 |
T |
|
| Q |
140 |
caacattgattgttcttagattaaacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtccaccgcttcttatttt |
239 |
Q |
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||||| |||| | || | | |||||| ||||| || || |||||||||||||||| ||||| ||||| || | ||||| ||||| || |||| ||| |
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| T |
38125380 |
caacagtgatgttcctgaactgaaacatgtcaagaataatgaagggttggttagagacatatgagataccttcaaagtcatggccaccactccttacttt |
38125281 |
T |
|
| Q |
240 |
gatttgaat |
248 |
Q |
| |
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|| |||||| |
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| T |
38125280 |
gagttgaat |
38125272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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