View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_28 (Length: 351)
Name: NF3813_high_28
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 33 - 338
Target Start/End: Complemental strand, 9023691 - 9023388
Alignment:
| Q |
33 |
acgactgtaattaaacttatttcctaccaattaatagtaaaacttatttagcttaagaatccccaacaaatcacatggaagattattaaagcaagggtga |
132 |
Q |
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| T |
9023691 |
acgacggtaattaaacttatttcctaccaa--aatagtaaaatttatttagcttaagaatccccaacaaatcacatggaagattattaaagcaagggtga |
9023594 |
T |
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| Q |
133 |
ggcttgtctccttctcatataagaaccccatgttctcttacctggatgttactgaaaagagaataaatgtctcaatatagttttagccaacaaaatgact |
232 |
Q |
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| T |
9023593 |
ggcttgtctccttctcatataagaaccccatgttctcttacctggatgttagtgaaaagagaataaatgtctcaatatagttttagccaacaaaatgact |
9023494 |
T |
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| Q |
233 |
gaaaggtttgacnnnnnnnttgttgaagaaaggtaatagcctttttctatatattcttttttaattatctcatcatgtatcacattgttatttgattctt |
332 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9023493 |
gaaaggtttgacaaaaaaattgttgaagaaaggtaatagcctttttctatatattcttttttaattatctcatcatgtatcacattgtgatttgattctt |
9023394 |
T |
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| Q |
333 |
ttgggg |
338 |
Q |
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|||||| |
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| T |
9023393 |
ttgggg |
9023388 |
T |
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