View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_3 (Length: 660)
Name: NF3813_high_3
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 22 - 575
Target Start/End: Complemental strand, 5576791 - 5576236
Alignment:
| Q |
22 |
tcgcaaagtatagaaaatctaatgtcaatttactatgatttgacaataattaaaagttaatttgctatgtccatgactaagccatgatatagtttcattc |
121 |
Q |
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| T |
5576791 |
tcgcaaagtatagaaaatctaatgtaaatttactatgatttgacaataattaaaagttaatttgctatgtccatgactaagccatgatatagtttcattc |
5576692 |
T |
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| Q |
122 |
attttcttcttagttattgannnnnnnnnnaaagatgcttcttagttgtaaataattggacactaattatgtccatgcgttagaattagactatatctct |
221 |
Q |
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| T |
5576691 |
attttcttcttagttattgattttgtttttaaagatgcttcttagttgtaaataattggacactaattatgttcatgcgttagaattagactatatctct |
5576592 |
T |
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| Q |
222 |
gatctttaaatctgatacttttaacaaagttccctcattttaaattaaaggttatgcacaacacaactttatgtttgaactgctcttccaatca--tgtt |
319 |
Q |
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| T |
5576591 |
gatctttaaatctgatacttttaacaaagttccctcattttaaattaaaggttatgcataacacaactttatgtttgaactgctctaccaatcatgtgtt |
5576492 |
T |
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| Q |
320 |
gatgatctcttcgccattttaacgtctctccaactactgcgttttgttttctttttgacattgtttcaatccattgcccatagacagaataactgnnnnn |
419 |
Q |
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| T |
5576491 |
gatgatctcatcgccattttaacatctctccaactactgcgttttgttttctttttgacattgtttcaatccattgcccatagatagaataatttttttt |
5576392 |
T |
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| Q |
420 |
nncttgccacatccagctcacaaagttctcctctcctatttcattggcgagctgaagtggaagctccatgagagaagacgatacagtgcaagaccattgt |
519 |
Q |
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| T |
5576391 |
ttcttgccacatccagctcacaaagttctcctctcctatttcattggcgagctgaagtggaagctccatgagagaagacgatacagtgcaagactattgt |
5576292 |
T |
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| Q |
520 |
ttggggctgtttgtatagtaacaggtttttatgatttgatttctgcataattgtct |
575 |
Q |
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| T |
5576291 |
ttggggctgtttgtatagtaacaggtttttatgatttgacttctgcataattgtct |
5576236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 46675383 - 46675285
Alignment:
| Q |
35 |
aaaatctaatgtcaatttactatgatttgacaataattaaaagttaatttgctatgtccatgactaagccatgatatagtttcattcattttcttctta |
133 |
Q |
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|||||||||||| |||||||||||| ||||| ||||| | |||||||||||||||||||||||||| |||||| ||| |||||| |||||||||||| |
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| T |
46675383 |
aaaatctaatgtggatttactatgatatgacattaatttgatgttaatttgctatgtccatgactaagtcatgatttagcttcattaattttcttctta |
46675285 |
T |
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