View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3813_high_30 (Length: 327)

Name: NF3813_high_30
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3813_high_30
NF3813_high_30
[»] chr4 (1 HSPs)
chr4 (18-314)||(14050790-14051086)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 14050790 - 14051086
Alignment:
Q  18 gctttgaggattttgattttgaaattgatggagattctcgcagtccttcctttaagggtatggaatcatttgaagattctgtttttgaatatgatgtaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||  |||||||||| |    
T  14050790 gctttgaggattttgattttgaaattgatggagattctcgcagtccttcctttaaggctatggaatcatttgaagaatctgttttttgatatgatgtata 14050889  T
Q  118 ctttattctaaattcatacacttgggtccacaacttttctgaatgtactaatcttttatctaattatgtggtgagtttctcttggtgattactttgtaaa 217  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14050890 ctttatcctaaattcataaacttgggtccataacttttctgaatgtactaatcttttatctaattacgtggtgagtttctcttggtgattactttgtaaa 14050989  T
Q  218 ctttattcttcatttctttatttattcttatgtttcatctttgaaatattgtagactattccttcttcaattatccaagatacagtgctgaagtcct 314  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||    
T  14050990 ttttattcttcatttctttatttagtcttatgtttcatctttgaaatattgtaaactattccttcttcaattgtccaagatacagtgctgaaatcct 14051086  T

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