View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_31 (Length: 323)
Name: NF3813_high_31
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 35927372 - 35927672
Alignment:
| Q |
9 |
gaacctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35927372 |
gaacctctggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
35927471 |
T |
|
| Q |
109 |
gtgacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccacta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35927472 |
gtgacacaatggagcgtagatgttatagaaatctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccacta |
35927571 |
T |
|
| Q |
209 |
gtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttcaaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35927572 |
gtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgaattcaaagcatgagtccaaaagtaatcaaataaccccttcaaac |
35927671 |
T |
|
| Q |
309 |
t |
309 |
Q |
| |
|
| |
|
|
| T |
35927672 |
t |
35927672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 35934198 - 35934480
Alignment:
| Q |
9 |
gaacctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
108 |
Q |
| |
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|||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
35934198 |
gaacctctggtctatttagataggcaataccatagttatcagaacaagggtcaaaatcattagttacataaccagttgaaccatttttcagagaagagtc |
35934297 |
T |
|
| Q |
109 |
gtgacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccacta |
208 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||| || | |||| ||||||||||||| | || |||| |||| |||| |
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| T |
35934298 |
atgacacaatggcgcatagatgttatagaagtctatctttcctttctcaatgaaggcccaatctgttacattgatacaaattgttgaataattt------ |
35934391 |
T |
|
| Q |
209 |
gtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataacccctt |
303 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35934392 |
------tgtttagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccagaagtaatcaaataacccctt |
35934480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 35909981 - 35910272
Alignment:
| Q |
9 |
gaacctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
108 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
35909981 |
gaacctctggtctatttagataggcagaaccataataatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcagagaggagtc |
35910080 |
T |
|
| Q |
109 |
gtgacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttg---catattgctgaagtatttcca |
205 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| | ||| | | ||| | ||||||||| ||| || ||||||||| |||| || |
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|
| T |
35910081 |
atgacacaatggagcatagatgttatataagtctatctttccatgttcaaagaaggcctttagtgttacattattgatacaaattgctgaaacattttca |
35910180 |
T |
|
| Q |
206 |
ctagtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttca |
305 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |
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|
| T |
35910181 |
gta------------gtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaggtaatcaaaaaaccccttta |
35910268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 35939766 - 35940052
Alignment:
| Q |
11 |
acctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtcgt |
110 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
35939766 |
acctctggtctatttagataggcagtgccatagtaatcagaacaagggtcaagatcattacttacataaccagttgaaccatttttcagagtagagtcgt |
35939865 |
T |
|
| Q |
111 |
gacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccactagt |
210 |
Q |
| |
|
|||| |||||||| ||||||||| || |||||||||||||||||||| | | | ||| || ||||| | || ||||||||| |||| |||| |
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| T |
35939866 |
gacataatggagcatagatgttaaaggagtctatctttcctttctcaatcatggacatattcattgcattggtacaaattgctgaataattttgtttagt |
35939965 |
T |
|
| Q |
211 |
gaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttcaaact |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||| ||||| |
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|
| T |
35939966 |
gaagtc------------acagtacttctcaatcaactcatgagtttgatccgagttcaaagcatgagtccacaagttatcatataacccctttaaact |
35940052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 35914419 - 35914699
Alignment:
| Q |
9 |
gaacctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
108 |
Q |
| |
|
|||||| |||| |||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| | ||||||||| |
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| T |
35914419 |
gaacctctggtgtatttagataggcagcaccatagtaatcagaacaagggtcaaagtcattagttacataaccagttgagccatttttgagagaagagtc |
35914518 |
T |
|
| Q |
109 |
gtgacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccacta |
208 |
Q |
| |
|
||||| | |||||| |||||||||||| ||||||||||||||| |||| | | ||| ||| |||| ||||| | || |||| |||| ||| |
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|
| T |
35914519 |
atgacatagtggagcatagatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcattgatacaaattgatgaaacgttt------ |
35914612 |
T |
|
| Q |
209 |
gtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataacccc |
301 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
35914613 |
------tcagaagtgaagtcacaatacttctcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccc |
35914699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 35920795 - 35921073
Alignment:
| Q |
16 |
tggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagtt---gaaccatttttcaaagaagagtcgtga |
112 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| ||| |
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|
| T |
35920795 |
tggtctatttagataggcagtaacatagtaatcagaacaagggtcaaaatcattgcttacgtaaccagtactagaaccatttttcagagaagagtcatga |
35920894 |
T |
|
| Q |
113 |
cacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccactagtga |
212 |
Q |
| |
|
|||||||| || | ||||||||||| ||||||||||||| ||||| | | ||| |||| ||| ||||||| || ||||||||| |||| |
|
|
| T |
35920895 |
cacaatggcgcatggatgttatagatgtctatctttcctgtctcaacgaaggccttatcagttgcattgttacaaattgctgaaacattt---------- |
35920984 |
T |
|
| Q |
213 |
agtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataacccctt |
303 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||| |||||| |
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|
| T |
35920985 |
--tctttagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagtttaaagcatgagtccacaagttatcatatatcccctt |
35921073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 21285260 - 21285187
Alignment:
| Q |
77 |
taaccagttgaaccatttttcaaagaagagtcgtgacacaatggagcgtagatgttatagaagtctatctttcc |
150 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
21285260 |
taaccagttgaaccatttttcagagaggagtcatgacacaatggagcatagatgttatataagtctatctttcc |
21285187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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