View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_33 (Length: 321)
Name: NF3813_high_33
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 170 - 313
Target Start/End: Complemental strand, 4794684 - 4794541
Alignment:
| Q |
170 |
agataaatcctctttttgagagaatgaggaaattgctaatgtccaattgtcttttaaacattagaattaaaatgacctacgtttatctaatctttgtatt |
269 |
Q |
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| T |
4794684 |
agataaatcctctttttgagagaatgaagaaattgctaatgtcgagtagtcttttaaacattagaattagaatgacctacgtttatctaatctttgtatt |
4794585 |
T |
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| Q |
270 |
gtcatgagcactttatttataagggtagcttatctccctatgct |
313 |
Q |
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| T |
4794584 |
gtcatgagcactttatttataagggtagcttatctccgtatgct |
4794541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 4842992 - 4842856
Alignment:
| Q |
167 |
aagagataaatcctctttttgagagaatgaggaaattgctaatgtccaattgtcttttaaacattagaattaaaatgacctacgtttatctaatctttg- |
265 |
Q |
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| T |
4842992 |
aagagatgaatcct-tttttgagagaatgagggaattgctagtgactagtagtcttttaa-cattaaaattagaatgccctacgtttttctattctttga |
4842895 |
T |
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| Q |
266 |
tattgtcatgagcactttatttataagggtagcttatct |
304 |
Q |
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| T |
4842894 |
tattgtcttgagcgctttatttataacggtagcttatct |
4842856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 4840547 - 4840430
Alignment:
| Q |
193 |
atgaggaaattgctaatgtccaattgtcttttaaacattagaattaaa----atgacctacgtttatctaatctttg-tattgtcatgagcactttattt |
287 |
Q |
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| T |
4840547 |
atgatgaaattgctaatgcccagtaatcttttaaacatcagaattaaattaaatgtcctacatttatatattttttgatatagtcttgagtgctttattt |
4840448 |
T |
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| Q |
288 |
ataagggtagcttatctc |
305 |
Q |
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| T |
4840447 |
ataagggtaggttatctc |
4840430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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