View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_34 (Length: 311)
Name: NF3813_high_34
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 39042335 - 39042218
Alignment:
| Q |
3 |
catagggaagataccttagtaacgtaagggtcaaatcagatgaatgaatgagataaatggattcattagccttttatttgaataatactgagcacaactt |
102 |
Q |
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| T |
39042335 |
catagggaagataccttagtaacgtaagggtcaaatcagatgaatgaatgagataaatggattcattagccttttatttgaataatactgagcacaactt |
39042236 |
T |
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| Q |
103 |
cttcattacagtttttca |
120 |
Q |
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| T |
39042235 |
cttcattacagtttttca |
39042218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 39040883 - 39040816
Alignment:
| Q |
181 |
ttacatgcctatacttttgagggaagaaaaacacattatggaagttctctactaacggtattccaggc |
248 |
Q |
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| T |
39040883 |
ttacatgcctatacttttgagggaagaaaaacacattatggaagttctctactaacggtattccaggc |
39040816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 39027989 - 39027919
Alignment:
| Q |
177 |
acacttacatgcctatacttttgagggaagaaaaacacattat-ggaagttctctactaacggtattccag |
246 |
Q |
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| T |
39027989 |
acactttcatgcctatacttttgagggcagaaaaacacattatgggaagttctcgaataatggtattccag |
39027919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 39040796 - 39040750
Alignment:
| Q |
249 |
gagtttattgatccatcttattgcggcacacaaaaatagcattgaat |
295 |
Q |
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| T |
39040796 |
gagtttattgatccatcttattgcggcacacaaaaatagcatcgaat |
39040750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 39028063 - 39028016
Alignment:
| Q |
118 |
tcataaactcataat-agtgcaagtgagtagccgaatatcataagaaa |
164 |
Q |
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| T |
39028063 |
tcataaactcatcattagtgcaagtgagtagccaaatatcataagaaa |
39028016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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