View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3813_high_35 (Length: 309)
Name: NF3813_high_35
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 76 - 266
Target Start/End: Complemental strand, 52508923 - 52508734
Alignment:
| Q |
76 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtgaacagcagtcatttgcaatttatacgactttgaagagannnnnnnnaa |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| || |
|
|
| T |
52508923 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtga-caacagtcatttgcaatttatatgactttgaagagattttttttaa |
52508825 |
T |
|
| Q |
176 |
tgaatcaaaattatttgtgcgcaatcagcaaaactatatatagactttggtttttgtatcatatgggtccgattcaaattttaagacaacc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
52508824 |
tgaatcaaaattatttgtgcgcaatcagcaaatctatatatagactttggtttttgaatcatatgggtccaattcaaattttaagacaacc |
52508734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 52509903 - 52509872
Alignment:
| Q |
52 |
aatatgaacttgtatttttacttcttttttat |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
52509903 |
aatatgaacttgtatttttacttcttttttat |
52509872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 76 - 262
Target Start/End: Original strand, 24621939 - 24622125
Alignment:
| Q |
76 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtgaacagcagtcatttgcaatttatacgactttgaagagannnnnnnn-a |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| | |
|
|
| T |
24621939 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtga-caacagtcatttgcaatttatatgactttgaagagattttttttta |
24622037 |
T |
|
| Q |
175 |
atgaatcaaaattatttgtgcgcaatcagcaaaactatatatagactttggtttttgtatcatatgggtccgattcaaattttaagac |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
24622038 |
atgaatcaaaattatttgtgcgcaatcagcaaatctatatatagactttggtttttgaatcatatgggtccaattcaaattttaagac |
24622125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University