View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_39 (Length: 277)
Name: NF3813_high_39
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45914366 - 45914424
Alignment:
| Q |
1 |
aaagtgaaatttttggattgaggtttgaaacaattcttagcagggaagaaaatgccgcg |
59 |
Q |
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| T |
45914366 |
aaagttaaatttttggattgaggttggaaacaattcttagcagggaagaaaatgccgcg |
45914424 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 45914470 - 45914516
Alignment:
| Q |
106 |
gttacataaagctataaaatcaagagtaaagccctattttagtccat |
152 |
Q |
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| T |
45914470 |
gttacataaagctataaaatcaagagtaaagccctattttagtccat |
45914516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 45914595 - 45914633
Alignment:
| Q |
229 |
cactaatatgataagggtttttgagttacattacctttg |
267 |
Q |
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| T |
45914595 |
cactaatatgataagggtttttgagttacattacctttg |
45914633 |
T |
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