View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_47 (Length: 250)
Name: NF3813_high_47
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2900689 - 2900450
Alignment:
| Q |
1 |
tatgctatagttcatcatgaggaacaaacacttgcttctcttaacattgcagtggagtaaaacccaaaatgcagttaa-ctcattatgttactttagcgg |
99 |
Q |
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| T |
2900689 |
tatgctatagttcatcatgaggaacaaacacttgcttctcttaacattgcagtggagtaaaacccaaaatgcagttaaactcattatgttactgtagcgg |
2900590 |
T |
|
| Q |
100 |
tttagccattaagataaattcatatgagaataaacacttgcaaatggttgataagcgaccgggaaaaataaggtatatatataaactaatatttcaattc |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
2900589 |
tttagccattgagataaattcatatgagaataaacacttgcaaatggttgataagcgaccgggaaaaataaagtttatatataaactaatagttcaattc |
2900490 |
T |
|
| Q |
200 |
aaactgataattatactgatatactaccgcatccgcctat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2900489 |
aaactgataattatactgatatactaccgcatccgcctat |
2900450 |
T |
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