View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_50 (Length: 245)
Name: NF3813_high_50
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4971680 - 4971452
Alignment:
| Q |
1 |
aacaaaatttcaaataaaaaagatggtaaaatatagggaattaaaacaagtaaccctcattaatgttttttactaactcagtttatttattgacataaat |
100 |
Q |
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| T |
4971680 |
aacaaaatttcaaataaaaaagatggtaaaatatagggaattaaaacaagtaaccctcattaatgttttttactaactcagtttatttattgacataaat |
4971581 |
T |
|
| Q |
101 |
ggtagtagtcaaggtaacaagatcctgcacacaaaattaaatttatggtatctatctaatagtactatatataacagaatcctacattgaaagatgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4971580 |
ggtagtagtcaaggtaacaagatcctgcacacaaaattaaatttatggtatctatctaatagtactatatataacagaatcctacattgaaagatgattt |
4971481 |
T |
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| Q |
201 |
ccttttaaaaaatgcatatttgttagaaa |
229 |
Q |
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|||||||||||||||| |||||||||||| |
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| T |
4971480 |
ccttttaaaaaatgcacatttgttagaaa |
4971452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4989588 - 4989361
Alignment:
| Q |
1 |
aacaaaatttcaaataaaaaagatggtaaaatatagggaattaaaacaagtaaccctcattaatgttttttactaactcagtttatttattgacataaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4989588 |
aacaaaatttcaaataaaaaagatggtaaaatatagggaattaaaacaagtaaccctcattaatgttttt-actaactcagtttatttattgacataaat |
4989490 |
T |
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| Q |
101 |
ggtagtagtcaaggtaacaagatcctgcacacaaaattaaatttatggtatctatctaatagtactatatataacagaatcctacattgaaagatgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989489 |
ggtagtagtcaaggtaacaagatcctgcacacaaaattaaatttatggtatctatctaatagtactatatataacagaatcctacattgaaagatgattt |
4989390 |
T |
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| Q |
201 |
ccttttaaaaaatgcatatttgttagaaa |
229 |
Q |
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|||||||||||||||| |||||||||||| |
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| T |
4989389 |
ccttttaaaaaatgcacatttgttagaaa |
4989361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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