View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_52 (Length: 245)
Name: NF3813_high_52
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 40139839 - 40139621
Alignment:
| Q |
17 |
aaaatttgtcaagtgaaccaaatcattcaaagtgatatagtagcaaatatatcgcctccacttatattgttgttttcttcaaatcccttctatctatttg |
116 |
Q |
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| T |
40139839 |
aaaatttgacaagtgaaccaaatcgttcaaagtgatatagtagcaaatatatcgcctccacttatattgttgttttcttcaaatcccttctatctatttg |
40139740 |
T |
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| Q |
117 |
ttggatcaatacatgtttcctaccaactatgacctaaggactatgtaagccatggttaattattaatattaatttgggagtttccatttcttgtttagtt |
216 |
Q |
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| T |
40139739 |
ttggatcaatacatgtttcctacaaactatgacctaaggactatgtaaaccatggttaattattaatattaatttgggagtttccatttcttgtttagtt |
40139640 |
T |
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| Q |
217 |
tctttgccgttattctctg |
235 |
Q |
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| T |
40139639 |
tctttgccgttattctctg |
40139621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 24762487 - 24762418
Alignment:
| Q |
91 |
ttcttcaaatcccttctatctatttgttggatcaatacatgtttcctaccaactatgacctaaggactat |
160 |
Q |
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| T |
24762487 |
ttcttcaaatctcctctacctctttgttagatcaatgcatgtttcctaccaattatgacctaaggactat |
24762418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 7142602 - 7142664
Alignment:
| Q |
113 |
tttgttggatcaatacatgtttcctaccaactatgacctaaggactatgtaagccatggttaa |
175 |
Q |
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| T |
7142602 |
tttgttggattaatgcatgtttcattccaattatgacctaaggactatataaacgatggttaa |
7142664 |
T |
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