View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_58 (Length: 237)
Name: NF3813_high_58
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_58 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 232116 - 232335
Alignment:
| Q |
18 |
gtatcgagtccaagtatggttggtattatgattcatgcaccaaatgtgcagcaagggttaagattgtggctggaaaaatgtattgttcgatatgtaagct |
117 |
Q |
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| T |
232116 |
gtatcgagtccaagtatggttggtattatgattcatgcaccaaatgtgcggcaagggttaagattgtggctggaaaaatgtattgttcgagatgtaagca |
232215 |
T |
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| Q |
118 |
gggaaggaatgttgtgccaaggccatctaactaatgatttttaaattttcttaattgcttcttcggatattttttcctgacgtgcaatatatctgttaat |
217 |
Q |
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| T |
232216 |
gggaaggaatgttgtgcccaggtcagctaactaatgatttttaaattttcttaattgcttctttggatattttttcctaacgtgcaatatatctgttaat |
232315 |
T |
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| Q |
218 |
tgatgtggttcttaattgtc |
237 |
Q |
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| T |
232316 |
tgatgtggttcttaattgtc |
232335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 14585259 - 14585040
Alignment:
| Q |
18 |
gtatcgagtccaagtatggttggtattatgattcatgcaccaaatgtgcagcaagggttaagattgtggctggaaaaatgtattgttcgatatgtaagct |
117 |
Q |
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| T |
14585259 |
gtatcgagtccaagtatggttggtattatgattcatgcaccaaatgtgcggcaagggttaagattgtggctggaaaaatgtattgttcgagatgtaagca |
14585160 |
T |
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| Q |
118 |
gggaaggaatgttgtgccaaggccatctaactaatgatttttaaattttcttaattgcttcttcggatattttttcctgacgtgcaatatatctgttaat |
217 |
Q |
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| T |
14585159 |
gggaaggaatgttgtgcccaggtcagctaactaatgatttttaaattttcttaattgcttctttggatattttttcctaacgtgcaatatatctgttaat |
14585060 |
T |
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| Q |
218 |
tgatgtggttcttaattgtc |
237 |
Q |
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| T |
14585059 |
tgatgtggttcttaattgtc |
14585040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 11217813 - 11217871
Alignment:
| Q |
32 |
tatggttggtattatgattcatgcaccaaatgtgcagcaagggttaagattgtggctgg |
90 |
Q |
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| T |
11217813 |
tatggttggtattatgatgcatgcaccaaatgtgctggaaggattacgattgttgctgg |
11217871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 11228320 - 11228378
Alignment:
| Q |
32 |
tatggttggtattatgattcatgcaccaaatgtgcagcaagggttaagattgtggctgg |
90 |
Q |
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|||||||||||||||||| |||||||||||||||| | |||| ||| |||||| ||||| |
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| T |
11228320 |
tatggttggtattatgatgcatgcaccaaatgtgctggaaggattacgattgttgctgg |
11228378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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