View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_60 (Length: 236)
Name: NF3813_high_60
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41818712 - 41818932
Alignment:
| Q |
1 |
tactcacccaaggtgcccatgctaatccagaaagccaagcctacaccaaaatatattatgaagagagcttagatatgatattaggaagcatgtaataaga |
100 |
Q |
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| T |
41818712 |
tactcacccaaggtgcccatgctaatccagaaagccaagcctacaccaaaatatattatgaagagagcttagatatgatattaggaagcatttaataaga |
41818811 |
T |
|
| Q |
101 |
agtaaaagaaagagaacttacatatgctattgatgcaagtaaagctgagcatagaatcactttctctccaaacaaaggattaagtattggaagcaataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
41818812 |
agtaaaagaaagagaacttacatatgctattgatgcaagtaaggctgagcatagaatcactttctcaccaaccaaaggattaagtattggaagcaataca |
41818911 |
T |
|
| Q |
201 |
atctggaagggagcttattat |
221 |
Q |
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||||||||| ||||||||||| |
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| T |
41818912 |
atctggaagcgagcttattat |
41818932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41825302 - 41825522
Alignment:
| Q |
1 |
tactcacccaaggtgcccatgctaatccagaaagccaagcctacaccaaaatatattatgaagagagcttagatatgatattaggaagcatgtaataaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
41825302 |
tactcacccaaggtgcccatgctaatccagaaagccaagcctacaccaaaatatattatcacaagagcttagatatgatattaggaagcatgtaataaga |
41825401 |
T |
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| Q |
101 |
agtaaaagaaagagaacttacatatgctattgatgcaagtaaagctgagcatagaatcactttctctccaaacaaaggattaagtattggaagcaataca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41825402 |
agtaaaagaaagagaacttacatatgctattgatgcaagtaaagctgagcatagaatcactttctctccaaccaaaggattaagtattggaagcaataca |
41825501 |
T |
|
| Q |
201 |
atctggaagggagcttattat |
221 |
Q |
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||||||||| ||||||||||| |
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| T |
41825502 |
atctggaagcgagcttattat |
41825522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 24461428 - 24461335
Alignment:
| Q |
128 |
tattgatgcaagtaaagctgagcatagaatcactttctctccaaacaaaggattaagtattggaagcaatacaatctggaagggagcttattat |
221 |
Q |
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||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||| |
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| T |
24461428 |
tattgatgcaagtaaggcagaaaatagaatcactttctctccaaccaaaggattaagtattggaagcatcacaatctgcaagccagcttattat |
24461335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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