View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_7 (Length: 594)
Name: NF3813_high_7
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 29287336 - 29287888
Alignment:
| Q |
18 |
acaccaccgtacacctaatctaaactcttttaaataaaaacaatggatgttcactaaatcgattattacaattttgaagactgaaacaatgatttactct |
117 |
Q |
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| T |
29287336 |
acaccaccgtacacctaatctaaattcttttaaataaaaacaatggatgttcactaaatcaattattacaattttgaagactgaaacaatgatttacttt |
29287435 |
T |
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| Q |
118 |
tcaaaatataaatatgattcacacaaaattttgagggattggaaaatatatgctaaagagtgtattgatgttacactccaaaaacaaaaccatataacaa |
217 |
Q |
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| T |
29287436 |
tcaaaatataaatatgattcacacaa--ttttgagggattggaaaatatatgctaaagagtgtattgatgttaccctccaaaaacaaaaccatataacaa |
29287533 |
T |
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| Q |
218 |
aaattatgtttcgtaattaagcattgcttgcaaaagaagaaaaaacacatgaaacatagaagactcaatagtattagtaatacacttgttttatttatat |
317 |
Q |
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| T |
29287534 |
aaattatgtttcgtaattaagcattgcttgcaaaagaagaaaaaacacatgaaacatagaagactcaatagtattagtaatacacttgttttatttatat |
29287633 |
T |
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| Q |
318 |
acgggaatattgttgaaccattacattatacattggaagactgaatttgaaatcttcctttcttatgtctactttacaattcaatgaatgaacgagaagt |
417 |
Q |
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| T |
29287634 |
acgggaatattgttgaac------------cattggaagactgaatttgaaatcttcctttcttatgtctactttacaattcaatgaatgaacaagaagt |
29287721 |
T |
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| Q |
418 |
attgtatacatccccagcttactaacaattctacagggtaagttgaagggtatcctgtacaaatatacacagtggtggatgtcatgatgtgctgaataaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287722 |
attgtatacatccccagcttactaacaattctacagggtaagttgaagggtaccctgtacaaatatacacagtggtggatgtcatgatgtgctgaataaa |
29287821 |
T |
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| Q |
518 |
tgttaagctctgattacatcgcaccatgttggtttatgaactcagtcatttgttcaatagctctctg |
584 |
Q |
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| T |
29287822 |
tgttaagctctgattacatcgcaccatgttggtttatgaactcagtcatttgttcaatagctctctg |
29287888 |
T |
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