View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_high_9 (Length: 583)
Name: NF3813_high_9
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 3 - 566
Target Start/End: Complemental strand, 26891447 - 26890888
Alignment:
| Q |
3 |
ggcgaaatacggcaaaggaacgacaactgtgaaatacggcaattgaacggcgacaaccaaacaccgcaaaggaacgacgatggcgtaataagaaaggaag |
102 |
Q |
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|||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26891447 |
ggcgaaatacggaaaaagaacgacaactgcaaaatacggaaattgaacggcgacaaccaaaaaccgcaaaggaacgacgatggcgtaataagaaaggaag |
26891348 |
T |
|
| Q |
103 |
cgcaaaacgaaagtaatgagtattcttcttcttatgtaacagatttacagaggttacagtcgggagaaacaggatgagaggtttttgaattggggaagtt |
202 |
Q |
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|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
26891347 |
cgcaaaacaaaagtgatgagtattcttctt---atgtaacagatttacagaggttacagttgg-ataaacaggatgagaggtttttgaattggggaagtt |
26891252 |
T |
|
| Q |
203 |
ttgattagttgtacagannnnnnnnacacataatccaacatgtcattcgggacactctcgggaaggaatctgtcgcgagaaatagtatttttcttaacat |
302 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26891251 |
ttgattagttgtacagattttttttacacataatccaacatgtcattcgggacactctcgggaaggaatctgtcgcgagaaatagcatttttcttaacac |
26891152 |
T |
|
| Q |
303 |
aaacattcaattatgatatttgcatttctttctcttcccgaatacatatttacatgcacatatagcacattctgctagatttgtgatatttacacctaaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26891151 |
aaacattcaattatgatatttgcatttctttctcttcccgaatacatatttacatgcacatatagcacattctgctagatttgtgatatttacacctaaa |
26891052 |
T |
|
| Q |
403 |
accttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaacagtcgagcctcgtgtgtccagggtgaaaaggcattcattcacat |
502 |
Q |
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| T |
26891051 |
accttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaacagtcgagcctcttgtgtccagggtgaaaaggcattcattcacat |
26890952 |
T |
|
| Q |
503 |
catcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgt |
566 |
Q |
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| T |
26890951 |
tatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgt |
26890888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 26641290 - 26641241
Alignment:
| Q |
517 |
gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgt |
566 |
Q |
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| T |
26641290 |
gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgt |
26641241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 26747256 - 26747207
Alignment:
| Q |
517 |
gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgt |
566 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||| |||| ||||| |
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| T |
26747256 |
gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgt |
26747207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 566
Target Start/End: Original strand, 27651844 - 27651877
Alignment:
| Q |
533 |
atctgtcagtatcacaatatgtacaaactcttgt |
566 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
27651844 |
atctgtcagtatcgcaatatgtacaaactcttgt |
27651877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 383 - 457
Target Start/End: Complemental strand, 5078720 - 5078646
Alignment:
| Q |
383 |
ttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaa |
457 |
Q |
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||||||||||||||||||||| ||||||||||| | ||||||||||||| | |||||||||||||||||||||| |
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| T |
5078720 |
ttgtgatatttacacctaaaaacttacaattgagatgtcttcccaccatagaagtcaatgaattgggacaccaaa |
5078646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
| Q |
520 |
attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt |
564 |
Q |
| |
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|||||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
18692037 |
attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt |
18692081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 296
Target Start/End: Complemental strand, 12072771 - 12072659
Alignment:
| Q |
183 |
gtttttgaattggggaagttttgattagttgtacagannnnnnnnacacataatccaacatgtcattcgggacactctcgggaaggaatctgtcgcgaga |
282 |
Q |
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|||||||||||||||||| ||| |||| |||| |||| |||| ||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
12072771 |
gtttttgaattggggaagattttattatttgtccagatgtcttttacacgtaatc-aacatgtcattcgggtcactctcgggaaggaaactgtcgcgaga |
12072673 |
T |
|
| Q |
283 |
aatagtatttttct |
296 |
Q |
| |
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||||| |||||||| |
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| T |
12072672 |
aatagcatttttct |
12072659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 12072957 - 12072865
Alignment:
| Q |
3 |
ggcgaaatacggcaaaggaacgacaactgtgaaatacggcaattgaacggcgacaaccaaacaccgcaaaggaacgacgatggcgtaataagaaaggaa |
101 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||| |||||||||||||| |||||||||| ||||||| |
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| T |
12072957 |
ggcgaaatacggcaaaggaacgacaacgg------acggcaattgaacaatgacaacgaaacacggcaaaggaacgacgccggcgtaataacaaaggaa |
12072865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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