View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_12 (Length: 525)
Name: NF3813_low_12
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 44440398 - 44439893
Alignment:
| Q |
1 |
ctcagaactcaattcaaatgaaggcttaccagtacaaccgtggagcatcttgaattagaatatcaccaccattgacaacccagtaaaatcccaccatcca |
100 |
Q |
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| T |
44440398 |
ctcagaactcaatttaaatgaaggcttaccagtacaaccgtggagcatcttgaattagaatatcaccaccattgacaacccagtaaaatcccaccatcca |
44440299 |
T |
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| Q |
101 |
ccaaagcaatgaaagcatggtattcaatgatgaacatcgttttgcaaatctgaattggaggtaatcaaaatcagtatctgcaattgtcagtatatattct |
200 |
Q |
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| T |
44440298 |
ccaaagcaatgaaagcatggtattcaatgatgaacatcgttttgcaaatctgaattggaggtaatcaaaatcagtatctacaattgtcagtatatattct |
44440199 |
T |
|
| Q |
201 |
tttacaagattgaacagaaacaataatggaatggagagattgaacgcacccggagctagaagaattcagaaattcaacatcatcatcctcttcactatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44440198 |
tttacaagattgaacagaaacaataatggaatggagagattgaacgcacccggagctagaagaattcagaaattcaacatcatcatcctcttcactatca |
44440099 |
T |
|
| Q |
301 |
ttaacatcatcgagagattcttcatccctttcccttccaccaccaatcacgttcctcctcctatactctaataacaccaacgccacgtgtaccaaacact |
400 |
Q |
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| T |
44440098 |
ttaacatcatcaagagattcttcatccctttcccttccaccaccaatcacgttcctcctcctatactctaataacaccaacgccacgtgtaccaaacact |
44439999 |
T |
|
| Q |
401 |
gtaccgcgtatccaaagatccacaaccggatcggcgtattcggattctcatcaacactgcaacctaacataaccgctgcaaccaccacaaagaccgtgtt |
500 |
Q |
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| T |
44439998 |
gtaccgcgtatccaaagatccacaaccggatcggcgtattcggattctcatcaacactgcaacctaacataaccgctgcaaccaccacaaagaccgtgtt |
44439899 |
T |
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| Q |
501 |
ccacgt |
506 |
Q |
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|||||| |
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| T |
44439898 |
ccacgt |
44439893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 11534076 - 11533994
Alignment:
| Q |
24 |
gcttaccagtacaaccgtggagcatcttgaattagaatatcaccaccattgacaacccagtaaaatcccaccatccaccaaag |
106 |
Q |
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|||||||||||||| || ||||||||||| | || ||||| ||||| ||||||||||||||| ||||||||||||||||| |
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| T |
11534076 |
gcttaccagtacaagcggggagcatcttgcagaaggatatcgtcaccagagacaacccagtaaaagcccaccatccaccaaag |
11533994 |
T |
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