View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_15 (Length: 464)
Name: NF3813_low_15
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_15 |
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| [»] scaffold0372 (2 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 152 - 456
Target Start/End: Original strand, 2381 - 2685
Alignment:
| Q |
152 |
attgaggatttgaggatttacgatgaagttttgaacttgcatccatgtcacggtcgatgtgagcgaaatgtttaaccatttgtgccaatcctagttggta |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2381 |
attgaggatttgaggatttacgatgaagttttgaacttgcatccatatcacggtcgatgtgagcgaaatgtttaaccatttgtgccaatcctagttgtta |
2480 |
T |
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| Q |
252 |
cattcctagcaatcttaattcacttgaatggaataatgtattatagtggattgtatttatttgattatgaaagggaatttatgttgattgggaaatctat |
351 |
Q |
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| T |
2481 |
cattcctagcaatcttaattcacttgaatggaataatgtattatagtggattgtatttatttgattatgaaagggaatttatgttgattgggaaatctat |
2580 |
T |
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| Q |
352 |
gatccgtgttatgaatttttatgaggcacggtggaacctaaatactacatagacaatagatttgtctacttctgcaactatagaatgtgatattgttata |
451 |
Q |
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| T |
2581 |
gatccatgttatgaatttttatgaggcacagtagaacctaaatactacatagacaatagatttgtctacttctgcaactatagaatgtgatattgttata |
2680 |
T |
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| Q |
452 |
ttgtt |
456 |
Q |
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||||| |
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| T |
2681 |
ttgtt |
2685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 2136 - 2273
Alignment:
| Q |
18 |
attgccccctttaatggttcaaagggtttggtatgcgtgtaaattcaacttcnnnnnnnnnngcttattctttcataattaatttcatgatttagtttat |
117 |
Q |
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| T |
2136 |
attgccccctttaatggttcaaagggtttggtatgcgtgtaaattcaactttttttttttttgcttatactttcataattaatttcatgatttagtttat |
2235 |
T |
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| Q |
118 |
aatgtctagctcatataacaatgtcaataacgatattg |
155 |
Q |
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| T |
2236 |
aatgtctagctcatataacaatgtcaataacgatattg |
2273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 152 - 456
Target Start/End: Complemental strand, 21449155 - 21448851
Alignment:
| Q |
152 |
attgaggatttgaggatttacgatgaagttttgaacttgcatccatgtcacggtcgatgtgagcgaaatgtttaaccatttgtgccaatcctagttggta |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21449155 |
attgaggatttgaggatttacgatgaagttttgaacttgcatccatatcacggtcgatgtgagcgaaatgtttaaccatttgtgccaatcctagttgtta |
21449056 |
T |
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| Q |
252 |
cattcctagcaatcttaattcacttgaatggaataatgtattatagtggattgtatttatttgattatgaaagggaatttatgttgattgggaaatctat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21449055 |
cattcctagcaatcttaattcacttgaatggaataatgtattatagtggattgtatttatttgattatgaaagggaatttatgttgattgggaaatctat |
21448956 |
T |
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| Q |
352 |
gatccgtgttatgaatttttatgaggcacggtggaacctaaatactacatagacaatagatttgtctacttctgcaactatagaatgtgatattgttata |
451 |
Q |
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||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21448955 |
gatccatgttatgaatttttatgaggcacagtagaacctaaatactacatagacaatagatttgtctacttctgcaactatagaatgtgatattgttata |
21448856 |
T |
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| Q |
452 |
ttgtt |
456 |
Q |
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||||| |
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| T |
21448855 |
ttgtt |
21448851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 21449401 - 21449263
Alignment:
| Q |
18 |
attgccccctttaatggttcaaagggtttggtatgcgtgtaaattcaacttcnnnnnnnnnn-gcttattctttcataattaatttcatgatttagttta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
21449401 |
attgccccctttaatggttcaaagggtttggtatgcgtgtaaattcaacttttttttttttttgcttatactttcataattaatttcatgatttagttta |
21449302 |
T |
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| Q |
117 |
taatgtctagctcatataacaatgtcaataacgatattg |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
21449301 |
taatgtctagctcatataacaatgtcaataacgatattg |
21449263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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