View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_17 (Length: 445)
Name: NF3813_low_17
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 20245937 - 20245517
Alignment:
| Q |
16 |
aaatcattcaatggtttgtgaataaaccctccttgatttcttcttctctccattaccatgtaaatgttgatgagagaaatttctattttccctctaaatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20245937 |
aaatcattcaatggtttgtgaataaaccctccttgatttcttcttctctccattaccatgtaaatgttgatgagagaaatttttattttccctctaaatt |
20245838 |
T |
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| Q |
116 |
gatagagggaatcaagactttnnnnnnnnnnnnnnnnnntccttctaaattgatagattcatcactctagtggatgaatctcaggaaaagttttacttat |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20245837 |
gatagagggaatcaagactttaaaaaaaaaaaaaaaa--tccttctaaattgatagattcatcactctagtggatgaatcccaggaaaagttttacttat |
20245740 |
T |
|
| Q |
216 |
gacaactttggaaaaatacaattttttataacttgatgatgattttattcatgaaagattttattttgtcttgaactttggatcactatgatattatgtt |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20245739 |
gacaactttggaaaattacaattttttataacttgatgatgattttattcatgaaagattttattttgtcttgaattttggatcactatgatattatgtt |
20245640 |
T |
|
| Q |
316 |
tcatgagcataaattattaatgcaagc--nnnnnnnnnttcctagctttgtttttggtaatggacattaggcctacaacctttatagatggtgannnnnn |
413 |
Q |
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||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20245639 |
tcatgagcataaattattaatgcaagcaaaaaaaaaagttcctaggtttttttttggtaatggacattaggcctacaacctttatatatggtgatttttt |
20245540 |
T |
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| Q |
414 |
ncaattttattggttagaattat |
436 |
Q |
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|||||||||||||||||||||| |
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| T |
20245539 |
tcaattttattggttagaattat |
20245517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 175 - 407
Target Start/End: Complemental strand, 20287447 - 20287218
Alignment:
| Q |
175 |
catcactctagtggatgaatctcaggaaaagttttacttatgacaactttggaaaaatacaattttttataacttgatgatgattttattcatgaaagat |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||| |||| |||||||||||| |
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| T |
20287447 |
catcactctagtggatgaatctcaggaaaagttttacttttgacaactttggaaaa-tacaattttttataacttaaagatgttttt-ttcatgaaagat |
20287350 |
T |
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| Q |
275 |
tttattttgtcttgaactttggatcactatgatattatgtttcatgagcataaattattaatgcaagcnnnnnnnnnttcctagctttgtttttggtaat |
374 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
20287349 |
tttattttgtcttgaattttgaatcactatgatattatgtttcatgagcataaattattaatgcaag-aaaaaaaaattccttgctttgtttttggtaat |
20287251 |
T |
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| Q |
375 |
ggacattaggcctacaacctttatagatggtga |
407 |
Q |
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| T |
20287250 |
ggacaataggcctgcaacctttatagatggtga |
20287218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 158 - 391
Target Start/End: Original strand, 10040561 - 10040789
Alignment:
| Q |
158 |
ttctaaattgatagattcatcactctagtggatgaatctcaggaaaagttttacttatgacaactttggaaaaatacaattttttataacttgatgatga |
257 |
Q |
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||||||||||||| || |||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
10040561 |
ttctaaattgatatatccatctgtctagtggatgaatgtcgggaaaagttttactt-tgacaactttggaaaaatacaatttt-tataacttgaagatga |
10040658 |
T |
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| Q |
258 |
ttttattcatgaaagattttattttgtcttgaactttggatcactatgatattatgtttcatgagcataaattattaatgcaagcnnnnnnnnnttccta |
357 |
Q |
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|||||||||||||| || ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
10040659 |
ttttattcatgaaatatattattttgtcttgaattttgaatcactatgatattgtgtttcatgagcataaattattaatgcaag---aaaaaaattcctt |
10040755 |
T |
|
| Q |
358 |
gctttgtttttggtaatggacattaggcctacaa |
391 |
Q |
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|||||||||||||||||||| || |||||||||| |
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| T |
10040756 |
gctttgtttttggtaatggatatcaggcctacaa |
10040789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 20287591 - 20287519
Alignment:
| Q |
16 |
aaatcattcaatggtttgtgaataaaccctccttgatttcttcttctctccattaccatgtaaatgttgatga |
88 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
20287591 |
aaatcattcaatggtttgtgaataaaccctcctagatttcttcttctctctattaccatgtaaatgttgatga |
20287519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 10039327 - 10039413
Alignment:
| Q |
16 |
aaatcattcaatggtttgtgaataaaccctccttgatttcttcttctctccattaccatgtaaatgttgatgagagaaatttctattttcc |
106 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |
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| T |
10039327 |
aaatcattcaatggtttgtgaataaac---cctagatttcttcttctctcaattaccatgt-aatgttgatgagagaaatttttattttcc |
10039413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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