View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_18 (Length: 440)
Name: NF3813_low_18
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Complemental strand, 25941277 - 25940854
Alignment:
| Q |
9 |
acatcatcagggagaaggaaaattaaaaaccctcacaatgaggcaatctgaactgacttctgaagtgcttccataaggctcctcatgattctgggctcac |
108 |
Q |
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| T |
25941277 |
acatcatcagggagaaggaaaattaaaaaccctcacaatgaggcaatctgaactgacttctgaagagcttccataaggctcctcatgattctgggctcac |
25941178 |
T |
|
| Q |
109 |
cctgtggcaccttatctttcatgcgcccatgtctggtcgcttggaaaactggaggagaactttcatttggtttaaaaaccaaacagtcaatatacacaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25941177 |
cctgtggcaccttatctttcatgcgcccatgtctggtcgcttggaaaactggaggagaactttcatttggtttaaaaaccaaacagtcaatatacacaag |
25941078 |
T |
|
| Q |
209 |
aacttctgtttccccaatgtctataaaccccaatcttgctccaccgggtattttgtcaacctgttttattcaattgaaatgagttagattgttgctaaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25941077 |
aacttctgtttccccaatgtctataaaccccaatcttgctccaccgggtattttgtcaacctgttttattcaattgaaatgagttagattgttgctgaca |
25940978 |
T |
|
| Q |
309 |
ctccaaaattgttgaaattaattgaacttcacagataagtgttgaaaagagtttttgtgacatcgttattggtacatactacttagctgtaggctagtag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25940977 |
ctccaaaattgttgaaattaattgaacttcacagataagtgttgaaaagagtttttgtgacatcgttattggtacatactacttagctgtaggctagtag |
25940878 |
T |
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| Q |
409 |
ctatgaattcacaccatcttattg |
432 |
Q |
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|||||||||||||||||||||||| |
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| T |
25940877 |
ctatgaattcacaccatcttattg |
25940854 |
T |
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