View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_2 (Length: 688)
Name: NF3813_low_2
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 7 - 672
Target Start/End: Original strand, 40271189 - 40271854
Alignment:
| Q |
7 |
caggttagaaacaacacatggttgatattggggaatagttttgagacacggtcaaagtaaattttttacactgtcaacaaattacaactcttcatttgtg |
106 |
Q |
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| T |
40271189 |
caggttagaaacaacaaacggttaatattagagaataattttgatacacggtcaaagtaaattttttacactgtcaaccaatcacaactcatcatttgta |
40271288 |
T |
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| Q |
107 |
tgatttttaggttgaatatgatattctcaaacttttttattgttcaaatggttatgtctgactgtaagtttaaaatatgtttacactgttggttcgtatg |
206 |
Q |
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| T |
40271289 |
tgacttttaagttaaatatgataatctcaaacttttttattgttcgaacggttatgactgactgaaagtgtaaaatatgtttacactgttggtacatatg |
40271388 |
T |
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| Q |
207 |
aattaaatcattaatattattagccagagttgataaaatgtaaataggaaggagacacataagaaaaatagatattgcaatcnnnnnnnagaattcaaaa |
306 |
Q |
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| T |
40271389 |
aattaaatcattaatattattagccagagttgataaaatgtaaataggaagtagacacataagaaaaatagatattgcaatctgtttttagaattcaaaa |
40271488 |
T |
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| Q |
307 |
tttctattataatatcagatggcctgagtgtaatgtatctaatattttagaaacagaaatagtaaagttcagagtttaagtacacataatgtgaagttga |
406 |
Q |
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| T |
40271489 |
tttctattataatatcatatggtctgagtgtaatgcatctaattttttagaaacagaaatagtaaagttcagagtttaagtacacataatgtgaagttga |
40271588 |
T |
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| Q |
407 |
ttttatttaagcatatcaaatgatcaaatcgacaagaagcttttcctatctaaaatttacaccacgtgtataaatcacagcaatacatgcatgtttaatg |
506 |
Q |
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| T |
40271589 |
ttttatttaagcatatcaaatgatcaaatcgacaagaagcttttcctatctaaaatttacaccacgtgtataaatcacagcaatacatgcatgtttaatg |
40271688 |
T |
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| Q |
507 |
aaattattgttccagcaagtaacctattatatcttgcaatcttgcaccataaggaatctactttgcaacacttcaaatgccaattataatgaaattatgt |
606 |
Q |
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| T |
40271689 |
aaattattgttccagcaagtaacctattatatcttgcaatcttgcaccataaggaatctactttgcaacacttcaaatgccaattataatgaaattatgt |
40271788 |
T |
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| Q |
607 |
actatatagtataaaagtaattcagtgcttcaaactaattagattacctgaccaacaacagttaag |
672 |
Q |
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| T |
40271789 |
actatatagtataaaactaactcagtgcttcaaactaattagattacctgaccaacaacagttaag |
40271854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 542
Target Start/End: Original strand, 40284205 - 40284252
Alignment:
| Q |
495 |
gcatgtttaatgaaattattgttccagcaagtaacctattatatcttg |
542 |
Q |
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| T |
40284205 |
gcatgtttaatgaaattattgttccaataagtaacctgttatatcttg |
40284252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 40256844 - 40256891
Alignment:
| Q |
497 |
atgtttaatgaaattattgttccagcaagtaacctattatatcttgca |
544 |
Q |
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| T |
40256844 |
atgtttattgaaattattgttccagccagtaacctggtatatcttgca |
40256891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 470
Target Start/End: Original strand, 40265541 - 40265593
Alignment:
| Q |
415 |
aagcatatcaaatgatcaaatcgacaagaagcttttcctatctaaaatttacacca |
470 |
Q |
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| T |
40265541 |
aagcctatcaaatgatcaaatctacaaga---tttttctatctaaaatttacacca |
40265593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 351 - 450
Target Start/End: Original strand, 40284080 - 40284177
Alignment:
| Q |
351 |
ttttagaaacagaaatagtaaagttcagagtttaagtacacataatgtgaagttgattttatttaagcatatcaaatgatcaaatcgacaagaagctttt |
450 |
Q |
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| T |
40284080 |
ttttagaaatagaaatggttaagattaaagtttgagtactcataatg--aagttaattttacttaagtgtatcaaatgacaaaatctacaagaagctttt |
40284177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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