View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_20 (Length: 430)
Name: NF3813_low_20
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 35694857 - 35695262
Alignment:
| Q |
10 |
ataatactctacaacaggcactccacaaatcttgtgaaacatattgttattttcggattcatgaatagttgtttcttgaaattgttcagtttgatattga |
109 |
Q |
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| T |
35694857 |
ataatactctacaacaggcactccacaaatcttgtgaaacatattgttattttcggattcatgaatagttgtttcttgaaattgttcagtttgatattga |
35694956 |
T |
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| Q |
110 |
acgtagcaaccttgaagttgtactcgtgccgatgtggaatcactgcacaaagtatttgatatatgaggaagtaaagatgttacacatgcgaaacaatctt |
209 |
Q |
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| T |
35694957 |
acgtagcaaccttgaagttgtactcgtgccgatgtggaatcactgcacaaagtatttgatatatgaggaagtaaagatgttacacatgcgaaacaatctt |
35695056 |
T |
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| Q |
210 |
ctttggtgaagtcgtttctgcattgaaaaaagccggagatgaaggtgtcgtcgttgattgcttcgttggttttgaagaacttgtactgggaagattgtgt |
309 |
Q |
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| T |
35695057 |
ctttggtgaagtcgtttctgcattgaaaaaagccggagatgaaggtgtcgtcgttgattgcttcgttggttttgaagaacttgtattgggaagattgtgt |
35695156 |
T |
|
| Q |
310 |
tatgaattgttggaataaggaattgagtgattgagaataagattgatggttgaaggtttgagttgagcatgttttgtatactaatttgttgtaattggaa |
409 |
Q |
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| T |
35695157 |
tatgaattgttggaataaggaattgagtgattgagaataagattgatggttgaaggtttgagttgagcatgttttgtatactaatttgttgtaattggaa |
35695256 |
T |
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| Q |
410 |
attggt |
415 |
Q |
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|||||| |
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| T |
35695257 |
attggt |
35695262 |
T |
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