View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_22 (Length: 420)
Name: NF3813_low_22
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 33 - 420
Target Start/End: Original strand, 43483064 - 43483451
Alignment:
| Q |
33 |
taaaatgtagtttttactaaaatcatgtggctggctgtgattctgacgagtttagagtcaatccaatcatacaattaagtttaaagaaaataaatgagtt |
132 |
Q |
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| T |
43483064 |
taaaatgtagtttttgctaaaatcatgtggctggctgtgattctgacgagtttagagtcaatccaatcatacagttaagtttaaagaaaataaatgagtt |
43483163 |
T |
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| Q |
133 |
tgtcagaccaaagattttgatccaataactaatttttaacctatgatcctgattattttttgagaggaatatcatccatagattataagcacagttgata |
232 |
Q |
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| T |
43483164 |
tgtcagaccaaagattttgatccaataactaatttttaacctatgatccagattattttttgagaggaatatcatccatagattataagcacagttgata |
43483263 |
T |
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| Q |
233 |
tgtattatctgatttccaaaaataagcatggcttgaaatctcaatcatggcttaattattttttcaattaatagaatcacaagacaaacagagtcctaaa |
332 |
Q |
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| T |
43483264 |
tgtattatctgatttccaaaaataagcatggcttgaaatctcaatcatggcttaattattttttcaattaatagaatcataagacaaacagagtcctaaa |
43483363 |
T |
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| Q |
333 |
caggagtttctgtcaagtgaccgaacaggtttgagaagacaaaatccttagtctttggtgaatttagagacaaacattatcactaact |
420 |
Q |
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| T |
43483364 |
caggagtttctgtcaagtgaccgaacaggtttgagaagacaaaatccttagtctttggtgaatttagagacaaacattatcactaact |
43483451 |
T |
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