View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_24 (Length: 388)
Name: NF3813_low_24
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 31268889 - 31269260
Alignment:
| Q |
1 |
tagagaagttgttccgaaaatgactcattcgaccaacatttgagaatcacgctatcttttcttaaattttagaagaaaagagagaattttgaaaacgtac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31268889 |
tagagaagttgttccgaaaatgactcattcgaccaacatttgagaatcacgctatcttttcttaaattttagaagaaaagagagaattttgaaaacgtac |
31268988 |
T |
|
| Q |
101 |
cttgcttgggattcttcggccatgaaagactgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31268989 |
cttgcttgggattcttcggccatgaaagactgagctttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttca |
31269088 |
T |
|
| Q |
201 |
tttcctttgaagaatttctcccacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31269089 |
tttcctttgaagaatttctcccacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttat |
31269188 |
T |
|
| Q |
301 |
gaatcataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatct |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31269189 |
gaatcataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatct |
31269260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 98 - 372
Target Start/End: Original strand, 54479117 - 54479391
Alignment:
| Q |
98 |
taccttgcttgggattcttcggccatgaaagactgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaaccct |
197 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||| ||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
54479117 |
taccttgcttgggattcttcgatcatgaaacactgagctttgagtataaaccatttcattgaaagaaggattaggatgtatgtagatagaatataaccct |
54479216 |
T |
|
| Q |
198 |
tcatttcctttgaagaatttctcccacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtt |
297 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||| | ||| | ||||| |||||||| |||||||||||| ||||||||||||||| || |
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| T |
54479217 |
tcatttcctttgaagaatttctcccaaagtggagccaacaaaacaggacctattgtcaagaacataaacgcaacctttggtgtttgtttgaatggagttt |
54479316 |
T |
|
| Q |
298 |
tatgaatcataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatct |
372 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||| || |||||||| |||||||||||||| ||||||| |
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|
| T |
54479317 |
tatgaatcataggttccaatgaagctctccaaaacaattcatcctcattcatgtcatgcatagccataggaatct |
54479391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 89 - 372
Target Start/End: Complemental strand, 1139629 - 1139346
Alignment:
| Q |
89 |
ttgaaaacgtaccttgcttgggattcttcggccatgaaagactgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaa |
188 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||| |||||| |||||| |||||| ||||||||||| |||||| | ||||||| |||||| ||| |
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|
| T |
1139629 |
ttgaatacataccttgcttgggattcttcggccataaaacactgagctttgattataaactgtttcattgaaggaaggactaggatgaacgtagatcgaa |
1139530 |
T |
|
| Q |
189 |
tacaacccttcatttcctttgaagaatttctcccacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttga |
288 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| | |||||||| |||| | | ||||| ||||| ||||| ||||||||||||||| ||||||| | |
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|
| T |
1139529 |
tacaacccttcgtttcctttaaagaatttctcccaaagcggagccaacaaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaa |
1139430 |
T |
|
| Q |
289 |
atggaggtttatgaatcataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatct |
372 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||||||||||||||| || |||||||| |||||||||||| | ||||||| |
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|
| T |
1139429 |
atggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcattcatgtcatgcatagccttaggaatct |
1139346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 98 - 372
Target Start/End: Complemental strand, 1136409 - 1136135
Alignment:
| Q |
98 |
taccttgcttgggattcttcggccatgaaagactgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaaccct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || |||||| |||||| ||||||||||| ||||| | ||||||| |||||| |||||||||||| |
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|
| T |
1136409 |
taccttgcttgggattcttcggccatgaaacactaagctttgattataaacggtttcattgaaggaagggctaggatgaacgtagatcgaatacaaccct |
1136310 |
T |
|
| Q |
198 |
tcatttcctttgaagaatttctcccacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtt |
297 |
Q |
| |
|
|| ||||||||||||||||||||||| | ||||| || |||||| | ||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| || |
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| T |
1136309 |
tcgtttcctttgaagaatttctcccaaagcggagctaacaaaacaggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttt |
1136210 |
T |
|
| Q |
298 |
tatgaatcataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatct |
372 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| || || ||||| |||||||||||| | ||||||| |
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|
| T |
1136209 |
tatgaatcataggagccaatgaagctctccaaaataattcatcctcgttcatgtcatgcatagccttaggaatct |
1136135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 97 - 372
Target Start/End: Original strand, 48324323 - 48324598
Alignment:
| Q |
97 |
gtaccttgcttgggattcttcggccatgaaagactgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaaccc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||| || |||||||||| ||||||||| ||| |||||||||||||||| ||||||| ||| |
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| T |
48324323 |
gtaccttgcttgggattcttcggccatgaaacacagatctttcattgtaaaccgtttgattgaaagatggacttggatgaatgtagattgaatacatccc |
48324422 |
T |
|
| Q |
197 |
ttcatttcctttgaagaatttctcccacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggt |
296 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || || || | ||||| |||||||||||||| |||| ||||||| |||| ||||| |||||| |
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|
| T |
48324423 |
ttcatttcctttgaagaatttctcccaaaaaggagctaacaagacgggaccttttgtcaaaaacataaaggcaatctttggtgtttgattgaacggaggt |
48324522 |
T |
|
| Q |
297 |
ttatgaatcataggaatcatcgaagctctccaaaataattcctcttcattcatatcatgcatagccattggaatct |
372 |
Q |
| |
|
| |||||||||| ||||| ||||| ||| | ||| ||||| || || ||||||||||| || |||||||||||| |
|
|
| T |
48324523 |
tcgtgaatcatagaaatcaacgaagttcttcgaaacaattcatcatcgttcatatcatgtgtaaccattggaatct |
48324598 |
T |
|
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