View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_29 (Length: 353)
Name: NF3813_low_29
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 11873022 - 11873355
Alignment:
| Q |
11 |
ttattctcaaagttaaacaacatatatacctcaaatcaaatcaatgaaacatttaacttagaaaattttcattagattaagtgtttctaaataatcttcc |
110 |
Q |
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| T |
11873022 |
ttattctcaaagttaaacaacatatatacctcaaatcaaatcaatgaaatatttaacttagaaaattttcattagtttaagtgtttctaaataatcttcc |
11873121 |
T |
|
| Q |
111 |
aaagtagtgccacatacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtca |
210 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11873122 |
aaagcagtgccacatacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtca |
11873221 |
T |
|
| Q |
211 |
agtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctggccaccattttcctg |
310 |
Q |
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| T |
11873222 |
agtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctggccaccattttcctg |
11873321 |
T |
|
| Q |
311 |
caaccagaaacaagaaaactttatttctgatgat |
344 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
11873322 |
taaccagaaacaagaaaactttatttcttatgat |
11873355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 11866415 - 11866741
Alignment:
| Q |
10 |
attattctcaaagttaaacaacatatatacctcaaatcaaatcaatgaaacatttaacttagaaaattttcattagattaagtgtttctaaataatcttc |
109 |
Q |
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|||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||| |||||| ||| |||| | |||| |
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| T |
11866415 |
attattctcaaagtcaaacaacatatatacttcagatcaaatcaatgaaacatttatctcagaaaattttcattagtttaagt--ttccaaattagcttc |
11866512 |
T |
|
| Q |
110 |
caaagtagtgccacatacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
11866513 |
caaagtagtgccacatacctccaactttcccatggatgaggaaacattgacaacttttggtgagcttgaaagctggagaaggggaataaatgcttcagtt |
11866612 |
T |
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| Q |
210 |
aagtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctggccaccattttcct |
309 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11866613 |
aagtccttggctccataatagtttgttttaatacctaattcagtttgttcatatgtttgagttattattttactccaatcaatctggccaccattttcct |
11866712 |
T |
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| Q |
310 |
gcaaccagaaacaagaaaactttatttct |
338 |
Q |
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| T |
11866713 |
gcaaccagaaacaagaaaactttatttct |
11866741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 124 - 338
Target Start/End: Original strand, 11877839 - 11878053
Alignment:
| Q |
124 |
atacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtcaagtcctttgctcc |
223 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |
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| T |
11877839 |
atacctccaactttcccatggatgaggaaacattgacaacttttggtgagcttgaaagctggagaaggggaataagtgcttcagttaagtccttggctcc |
11877938 |
T |
|
| Q |
224 |
atagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctggccaccattttcctgcaaccagaaacaa |
323 |
Q |
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||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
11877939 |
ataatagtttgttttaatacctaattcagtttcttcatatgtttgagttattattttactccaatcaatctggccaccattttcctacaaccaaaaacaa |
11878038 |
T |
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| Q |
324 |
gaaaactttatttct |
338 |
Q |
| |
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||||||||||||||| |
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| T |
11878039 |
gaaaactttatttct |
11878053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 124 - 338
Target Start/End: Original strand, 11892846 - 11893060
Alignment:
| Q |
124 |
atacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtcaagtcctttgctcc |
223 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |
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| T |
11892846 |
atacctccaactttcccatggatgaggaaacattgacaacttttggtgagcttgaaagctggagaaggggaataagtgcttcagttaagtccttggctcc |
11892945 |
T |
|
| Q |
224 |
atagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctggccaccattttcctgcaaccagaaacaa |
323 |
Q |
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||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
11892946 |
ataatagtttgttttaatacctaattcagtttcttcatatgtttgagttattattttactccaatcaatctggccaccattttcctacaaccaaaaacaa |
11893045 |
T |
|
| Q |
324 |
gaaaactttatttct |
338 |
Q |
| |
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||||||||||||||| |
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| T |
11893046 |
gaaaactttatttct |
11893060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 124 - 338
Target Start/End: Original strand, 11895255 - 11895469
Alignment:
| Q |
124 |
atacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtcaagtcctttgctcc |
223 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |
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| T |
11895255 |
atacctccaactttcccatggatgaggaaacattgacaacttttggtgagcttgaaagctggagaaggggaataagtgcttcagttaagtccttggctcc |
11895354 |
T |
|
| Q |
224 |
atagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctggccaccattttcctgcaaccagaaacaa |
323 |
Q |
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||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
11895355 |
ataatagtttgttttaatacctaattcagtttcttcatatgtttgagttattattttactccaatcaatctggccaccattttcctacaaccaaaaacaa |
11895454 |
T |
|
| Q |
324 |
gaaaactttatttct |
338 |
Q |
| |
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||||||||||||||| |
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| T |
11895455 |
gaaaactttatttct |
11895469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 192 - 331
Target Start/End: Original strand, 11938419 - 11938558
Alignment:
| Q |
192 |
ggaataagggcttctgtcaagtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaa |
291 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||| |||||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11938419 |
ggaataagtgcttcggtcaagtccttgcctccatagaagtttgttctaataccaacttaagtttgttcataggtttgagttattattttactccaatcaa |
11938518 |
T |
|
| Q |
292 |
tctggccaccattttcctgcaaccagaaacaagaaaactt |
331 |
Q |
| |
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| |||||||| ||||||| |||||| |||||||||||||| |
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| T |
11938519 |
tttggccacctttttccttcaaccaaaaacaagaaaactt |
11938558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 11915790 - 11915651
Alignment:
| Q |
192 |
ggaataagggcttctgtcaagtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaa |
291 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||| |||||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11915790 |
ggaataagtgcttcggtcaagtccttgcctccatagaagtttgttctaataccaacttaagtttgttcataggtttgagttattattttactccaatcaa |
11915691 |
T |
|
| Q |
292 |
tctggccaccattttcctgcaaccagaaacaagaaaactt |
331 |
Q |
| |
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| |||||| | ||||||| |||| | |||||||||||||| |
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| T |
11915690 |
tttggccatctttttccttcaacaaaaaacaagaaaactt |
11915651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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