View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3813_low_32 (Length: 327)

Name: NF3813_low_32
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3813_low_32
NF3813_low_32
[»] chr4 (1 HSPs)
chr4 (18-314)||(14050790-14051086)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 14050790 - 14051086
Alignment:
Q  18 gctttgaggattttgattttgaaattgatggagattctcgcagtccttcctttaagggtatggaatcatttgaagattctgtttttgaatatgatgtaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||  |||||||||| |    
T  14050790 gctttgaggattttgattttgaaattgatggagattctcgcagtccttcctttaaggctatggaatcatttgaagaatctgttttttgatatgatgtata 14050889  T
Q  118 ctttattctaaattcatacacttgggtccacaacttttctgaatgtactaatcttttatctaattatgtggtgagtttctcttggtgattactttgtaaa 217  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14050890 ctttatcctaaattcataaacttgggtccataacttttctgaatgtactaatcttttatctaattacgtggtgagtttctcttggtgattactttgtaaa 14050989  T
Q  218 ctttattcttcatttctttatttattcttatgtttcatctttgaaatattgtagactattccttcttcaattatccaagatacagtgctgaagtcct 314  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||    
T  14050990 ttttattcttcatttctttatttagtcttatgtttcatctttgaaatattgtaaactattccttcttcaattgtccaagatacagtgctgaaatcct 14051086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University