View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_34 (Length: 321)
Name: NF3813_low_34
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 290
Target Start/End: Complemental strand, 28975972 - 28975703
Alignment:
| Q |
22 |
tgtgtgttttttgtttcctacaa-cacgaaatgctctccattttcactagcaagatgtttttcctgcatagcataatttctttctcagcagaaggatctg |
120 |
Q |
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| T |
28975972 |
tgtgtgttttttgtttcctacaaacacgaaatgctctccattttcactagcaagatgtttttcctgcatagcataatttgtttctcagcagaaggatctg |
28975873 |
T |
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| Q |
121 |
gacagacgaaggacacgagaccttcgccgtgaaaactcgtactccaccgccgtgcaaagcttttgttggtggccggtttgagtgggggagagaaaggaac |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28975872 |
gacagacgaaggacacgagaccttcgccgtgaaaactcgtactccaccgccgtgcgaagcttttgttggtggccagtttgagtgggggagagaaaggaac |
28975773 |
T |
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| Q |
221 |
atggtgaacagacagacgagaggagaggagggggagaaggtaagtcatgaagagagaaactcagcttatt |
290 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28975772 |
atggtgaacagacacaggagaggagaggagggggagaaggtaagtcgtgaagagagaaactcagcttatt |
28975703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 21274609 - 21274660
Alignment:
| Q |
239 |
agaggagaggagggggagaaggtaagtcatgaagagagaaactcagcttatt |
290 |
Q |
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| T |
21274609 |
agaggagatgagggggagaaggtaagtcatggagagagaaactcaacttatt |
21274660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 26068120 - 26068171
Alignment:
| Q |
239 |
agaggagaggagggggagaaggtaagtcatgaagagagaaactcagcttatt |
290 |
Q |
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| T |
26068120 |
agaggagatgagggggagaaggtaagtcgtggagagagaaactcaacttatt |
26068171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 6378391 - 6378661
Alignment:
| Q |
18 |
cctctgtgtgttttttgtttcctacaacacgaaatgctctccattttcactagcaagatgtttttcctgcatagcataatttctttctcagcagaaggat |
117 |
Q |
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||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
6378391 |
cctctatgtgtttttt--ttcctgcaacacgaaatgctctccattttcactagcaagatgtttttcctgcataacataatttatttctcagcagaaggat |
6378488 |
T |
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| Q |
118 |
ctggacagacgaaggacacgagaccttcgccgtgaaaactcgtactccaccgccgtgcaaagcttttgttggtggccggtttgagtgggggagagaaagg |
217 |
Q |
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||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6378489 |
ctggacagacgaaagacacgagaccgtcgccatgaaaactcgtactccaccgccgtgcaaagcttttgttggcggccggtttgagtgggggagagaaagg |
6378588 |
T |
|
| Q |
218 |
aacatggtgaacagacagacgagaggagaggagggggagaaggtaagtcatgaagagagaaactcagcttatt |
290 |
Q |
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||||||||||||||| ||| ||||||| ||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
6378589 |
aacatggtgaacagatagaggagaggataggagggggagaaggtaaggcgtggagagagaaactcagcttatt |
6378661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 48817722 - 48817671
Alignment:
| Q |
239 |
agaggagaggagggggagaaggtaagtcatgaagagagaaactcagcttatt |
290 |
Q |
| |
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|||||||| ||||||||||||||||||| || ||||||||||||| |||||| |
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| T |
48817722 |
agaggagatgagggggagaaggtaagtcgtggagagagaaactcaacttatt |
48817671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 37992153 - 37992113
Alignment:
| Q |
239 |
agaggagaggagggggagaaggtaagtcatgaagagagaaa |
279 |
Q |
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|||||||||||||||||||||||||| | || ||||||||| |
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| T |
37992153 |
agaggagaggagggggagaaggtaaggcgtggagagagaaa |
37992113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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