View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3813_low_38 (Length: 300)
Name: NF3813_low_38
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 25940833 - 25940552
Alignment:
| Q |
3 |
aataaagatttgcgaattagat-attacatgataattttcaagtttccgaaattaaaccttgattctccataatagcaaggatcaccacgacttgattac |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25940833 |
aataaagatttgcgaattagattattacatgataattttcaagttgccgaaattaaaccttgattctccataatagcaaggatcaccacgacttgattac |
25940734 |
T |
|
| Q |
102 |
aacaattaccatgaccgttatttaaaacagtgttacaactataatttgaattctctaactaggcaatgatttaataacttctgtagttctatgttgttca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25940733 |
aacaattaccatgaccgttatttaaaacagtgttacagctataatttgaattctctaact-ggcaatgatttaataacttctgtagttctatgttgttca |
25940635 |
T |
|
| Q |
202 |
aagagtggcaaattaagctatctagcatgaacttaaggaacttgaaacaaatcaaatggctaccataggaagctaagagtatc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25940634 |
aagagtggcaaattaagctatctagcatgaacttaaggaacttaaaacaaatcaaatggctgccataggaagctaagagtatc |
25940552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University