View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_40 (Length: 297)
Name: NF3813_low_40
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_40 |
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| [»] scaffold0179 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 894284 - 894356
Alignment:
| Q |
210 |
gcaagagagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatgaaagt |
282 |
Q |
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| T |
894284 |
gcaagagagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatgaaagt |
894356 |
T |
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Target: scaffold0179 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 6570 - 6462
Alignment:
| Q |
78 |
ttttcagggtgttgagagtggtggattcattgatagagtctataaaaagattagtaagcgaaaaggagaagnnnnnnnnttatcctagaggagaaaggag |
177 |
Q |
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| T |
6570 |
ttttgagggtgttgagagtggtggattcattcatagagtctataaaaagattaataagcgaaaaggagaaggaaaaaaaatatcctagaggagaaaggag |
6471 |
T |
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| Q |
178 |
aggaatgga |
186 |
Q |
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| T |
6470 |
agggatgga |
6462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 6436 - 6368
Alignment:
| Q |
215 |
agagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatgaaagtg |
283 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||| |
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| T |
6436 |
agagaagaaataagatataattttaccacaatattgcaatggtagtggaatccaacaaccatgaaagtg |
6368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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