View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3813_low_43 (Length: 276)
Name: NF3813_low_43
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 116 - 266
Target Start/End: Original strand, 6379454 - 6379608
Alignment:
| Q |
116 |
taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
6379454 |
taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagcagatcagagtttgacttcatataaccctctttctgtacatattg |
6379553 |
T |
|
| Q |
212 |
ccttatctagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
266 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6379554 |
ccttatatagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
6379608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 116 - 266
Target Start/End: Original strand, 6384145 - 6384299
Alignment:
| Q |
116 |
taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
6384145 |
taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagcagatcagagtttgacttcatataaccctctttctgtacatattg |
6384244 |
T |
|
| Q |
212 |
ccttatctagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
266 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6384245 |
ccttatatagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
6384299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 116 - 266
Target Start/End: Complemental strand, 1617607 - 1617453
Alignment:
| Q |
116 |
taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1617607 |
taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagcagatcagagtttgacttcatataaccctctttctgtacatattg |
1617508 |
T |
|
| Q |
212 |
ccttatctagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
266 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1617507 |
ccttatatagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
1617453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 116 - 266
Target Start/End: Complemental strand, 1622299 - 1622145
Alignment:
| Q |
116 |
taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1622299 |
taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagcagatcagagtttgacttcatataaccctctttctgtacatattg |
1622200 |
T |
|
| Q |
212 |
ccttatctagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
266 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1622199 |
ccttatatagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
1622145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 116 - 266
Target Start/End: Original strand, 42574086 - 42574240
Alignment:
| Q |
116 |
taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| |||| ||| |||||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
42574086 |
taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagaagatcagagtttgacttcatataaccctctttctgtacatattg |
42574185 |
T |
|
| Q |
212 |
ccttatctagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
266 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42574186 |
ccttatatagtttattgtatttaagtcctagtttattgtcattaattctcctttg |
42574240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 42573223 - 42573303
Alignment:
| Q |
113 |
aactaaaagagaatcacatcattttagcatattctgttttagtatgatta----atagcagatcatagtttgacttcatat |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||| |||||| ||||||||||||||| |
|
|
| T |
42573223 |
aactaaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagaagatcagagtttgacttcatat |
42573303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 444878 - 444922
Alignment:
| Q |
71 |
acataagaaatatcttttcacaaccggcaagcaatggttgataac |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
444878 |
acataagaaatattttttcacaaccggcaagcaatggttgataac |
444922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University